View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_30 (Length: 249)
Name: NF13925_low_30
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6869402 - 6869638
Alignment:
| Q |
1 |
tggaaatatgtatgacattctgcatattcaaaaggttgtgcttcctcttccttatttgcatcaaaacaacattatacacagagacctcaaaaactgttaa |
100 |
Q |
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| T |
6869402 |
tggaaatatgtatgactttctgcatattcaaaacgttgtgcttactcttccttatttgcatcaaaacaacattatacatagagacttcaaaa-ctgttaa |
6869500 |
T |
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| Q |
101 |
tcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttcttaggtaatgctttcaaatcatactata |
200 |
Q |
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| T |
6869501 |
tcttttgatggattagaaaggggtaagtgactattaatttatcatttcttttgattttacaagttcttgttcttaggtaatgctttcaaatcatactata |
6869600 |
T |
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| Q |
201 |
acaatataaaccactctaaaactctagttgtgtatatt |
238 |
Q |
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| T |
6869601 |
acaatataaaccactctaaaactctagttgtgtatatt |
6869638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3106733 - 3106497
Alignment:
| Q |
1 |
tggaaatatgtatgacattctgcatattcaaaaggttgtgcttcctcttccttatttgcatcaaaacaacattatacacagagacctcaaaaactgttaa |
100 |
Q |
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| T |
3106733 |
tggaaataagtatgactttctgcatatacaaaaggttgtgcttactcttccttatttgcatcaaaacaacattatacatagagacctcaaaa-ctgtaaa |
3106635 |
T |
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| Q |
101 |
tcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttcttaggtaatgctttcaaatcatactata |
200 |
Q |
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| T |
3106634 |
tcttttgatggatgagaaaggggtaagtgactattaatttgccatttcttttgattttacaggttcttgttcttagttaatgctttcaaatcatactata |
3106535 |
T |
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| Q |
201 |
acaatataaaccactctaaaactctagttgtgtatatt |
238 |
Q |
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| T |
3106534 |
acaatataaatcactctaaaactctagttgtgtatatt |
3106497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41222011 - 41222247
Alignment:
| Q |
1 |
tggaaatatgtatgacattctgcatattcaaaaggttgtgcttcctcttccttatttgcatcaaaacaacattatacacagagacctcaaaaactgttaa |
100 |
Q |
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| T |
41222011 |
tggaaatatctatgactttcagcatgtacaaaaggttgtacttactcttccttatttgcatcaaaacatcattatacatagagacctcaaaaa-tgttag |
41222109 |
T |
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| Q |
101 |
tcttttgatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttcttaggtaatgctttcaaatcatactata |
200 |
Q |
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| T |
41222110 |
tattttgatggatgagaaaggggtaagtgactattaatttgtcatttcttttgattttacaggttcttgttcttagttaatgctttcaaatcatactata |
41222209 |
T |
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| Q |
201 |
acaatataaaccactctaaaactctagttgtgtatatt |
238 |
Q |
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| T |
41222210 |
acaatataaaccactctaaaactctagttgtgtatatt |
41222247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 8450147 - 8449961
Alignment:
| Q |
51 |
cttatttgcatcaaaacaacattatacacagagacctcaaaaactgttaatcttttgatggattagaaaggggtaagtgactattaatttgtcatttctt |
150 |
Q |
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| T |
8450147 |
cttatttgcatcaaaacaacattatacatcgagacctcaaaa-ctgctaatcttttgatggatgagaaaggggtaagtgactattaatttgtcatttctt |
8450049 |
T |
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| Q |
151 |
ttcattttacaggttcttgttcttaggtaatgctttcaaatcatactataacaatataaaccactctaaaactctagttgtgtatatt |
238 |
Q |
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| T |
8450048 |
ttgattttacaggttcttgttcttgaataatgctttcaaatcatactataacaatataaaccactctaaaactgtagttgtgtatatt |
8449961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48731285 - 48731046
Alignment:
| Q |
1 |
tggaaatatgtatgacattctgcatattcaaaaggttgtgcttcctcttccttatttgcatcaaaacaacattatacacagagacctcaaaaactgttaa |
100 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| |
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| T |
48731285 |
tggaaatatgtatgactatctgcatatacaaaaggttgtgctcactcttccttatttgcatcaaaacaacattattcatacagacctcaaaa-ctgttaa |
48731187 |
T |
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| Q |
101 |
tctttt-----gatggattagaaaggggtaagtgactattaatttgtcatttcttttcattttacaggttcttgttcttaggtaatgctttcaaatcata |
195 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| |
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| T |
48731186 |
tcttttcttttgatggatgagaaatgggtaagtgactattaatttgtcatttctttgaattttacaagttcttgttcttagttgatgctttcaaatcata |
48731087 |
T |
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| Q |
196 |
ctata-acaatataaaccactctaaaactctagttgtgtat |
235 |
Q |
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| T |
48731086 |
ctatataaaatataaaccactctaaaactctagttgtgtat |
48731046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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