View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_32 (Length: 222)
Name: NF13925_low_32
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 50667919 - 50667725
Alignment:
| Q |
14 |
catcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaa |
113 |
Q |
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| T |
50667919 |
catcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaa |
50667820 |
T |
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| Q |
114 |
acttgtatgccttataactcctccaaattcatctacgccttcaatattaggcacaacagcttcggcattctcaccggtcgctacgatcaaccaac |
208 |
Q |
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| T |
50667819 |
acttgtatgccttataactcctccaaattcatctacgccttcaatattaggcacaacagcttcggcattctcaccggtcgctacgatcaaccaac |
50667725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 888403 - 888595
Alignment:
| Q |
14 |
catcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaa |
113 |
Q |
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| T |
888403 |
catcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaa |
888502 |
T |
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| Q |
114 |
acttgtatgccttataactcctccaaattcatctacgccttcaatattaggcacaacagcttcggcattctcaccggtcgctacgatcaacca |
206 |
Q |
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| T |
888503 |
actagtatgcctaatactaccaacaaactcatcaactccttcaatctcgggtacaaccgcctcagcattctctccggttgcaacgatcaacca |
888595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 29857478 - 29857545
Alignment:
| Q |
25 |
caaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
92 |
Q |
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| T |
29857478 |
caaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
29857545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 17408184 - 17408131
Alignment:
| Q |
18 |
atggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac |
71 |
Q |
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||||||||||||||| | | |||||||||| |||||||| ||||| |||||||| |
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| T |
17408184 |
atggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
17408131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 32790129 - 32790064
Alignment:
| Q |
18 |
atggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttctt |
83 |
Q |
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|||||| ||||| ||||||||||| |||||||| ||||| ||||| || || |||||||| ||||| |
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| T |
32790129 |
atggttgcaaaggtctaaacaaacctccatacctgaatttccacaccccaccaccaaaacattctt |
32790064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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