View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_33 (Length: 213)
Name: NF13925_low_33
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 13308455 - 13308658
Alignment:
| Q |
1 |
ctaaagagcaggtgaaaaagcaacaaaaagacaacaagcagaaagagatggcccttctaatgtttcaatgtttgaatgcagggaaaattgtggacaacaa |
100 |
Q |
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| T |
13308455 |
ctaaagagcaggtgaaaaagcaacaaaaagacaacaagcagaaagagatagcccttctaatgtttcaatgcctgaatgcagggaaaattgtggacaacaa |
13308554 |
T |
|
| Q |
101 |
tatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaaatt |
200 |
Q |
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| T |
13308555 |
tatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaaaat |
13308654 |
T |
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| Q |
201 |
caaa |
204 |
Q |
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|||| |
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| T |
13308655 |
caaa |
13308658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 15076010 - 15076146
Alignment:
| Q |
60 |
atgtttcaatgtttgaatgcagggaaaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggaca |
159 |
Q |
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| T |
15076010 |
atgtttcaatgtattaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaa |
15076109 |
T |
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| Q |
160 |
ttggaagaaggttggaagcagtggacaataatggtca |
196 |
Q |
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| T |
15076110 |
ctgatagaagattggaaaaagtggataataatggtca |
15076146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 15073261 - 15073353
Alignment:
| Q |
104 |
gtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtca |
196 |
Q |
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| T |
15073261 |
gtcaatgattgatttgaatgttcttgcttggttgattgatcaaaatttgaaggatattcatagaagattggaagaagtggataataatggtca |
15073353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 11096184 - 11096236
Alignment:
| Q |
124 |
atcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaa |
176 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| ||| | |||||| |
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| T |
11096184 |
atctttcttggttgattgaccataatttgaaggacattggtagacgtttggaa |
11096236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 11247995 - 11247929
Alignment:
| Q |
131 |
ttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaa |
197 |
Q |
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||||||||||||||| || |||||||| |||| |||||||||| || || ||| |||||||||||| |
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| T |
11247995 |
ttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaagaggataataatggtcaa |
11247929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 11106879 - 11106912
Alignment:
| Q |
124 |
atcttgcttggttgattgaccaaaatttgaagga |
157 |
Q |
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| T |
11106879 |
atcttgcttggttgattgaccacaatttgaagga |
11106912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 10987169 - 10987249
Alignment:
| Q |
124 |
atcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaaattcaaa |
204 |
Q |
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|||||||||||||||||||||| || ||||||||| ||| ||| | ||||||||| ||| || |||| ||||| ||||| |
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| T |
10987169 |
atcttgcttggttgattgaccataaattgaaggacgttgctagacgtttggaagcatgggataacaatgatcaaaatcaaa |
10987249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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