View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13925_low_4 (Length: 559)

Name: NF13925_low_4
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13925_low_4
NF13925_low_4
[»] chr4 (28 HSPs)
chr4 (359-554)||(27648962-27649157)
chr4 (146-354)||(22375835-22376045)
chr4 (146-352)||(54508510-54508717)
chr4 (146-353)||(18493731-18493942)
chr4 (145-351)||(34021248-34021459)
chr4 (144-352)||(4608054-4608263)
chr4 (149-354)||(23237456-23237663)
chr4 (16-124)||(27649177-27649285)
chr4 (144-348)||(27512852-27513058)
chr4 (201-354)||(39606236-39606388)
chr4 (201-352)||(32595039-32595189)
chr4 (212-278)||(44222960-44223026)
chr4 (224-350)||(18502008-18502133)
chr4 (212-265)||(13768529-13768582)
chr4 (201-278)||(21733870-21733947)
chr4 (216-281)||(43892868-43892933)
chr4 (212-265)||(46721870-46721923)
chr4 (201-265)||(20618746-20618810)
chr4 (212-278)||(30226670-30226736)
chr4 (201-278)||(20167499-20167576)
chr4 (204-265)||(8762860-8762921)
chr4 (216-265)||(23609297-23609346)
chr4 (212-265)||(32824627-32824680)
chr4 (318-354)||(30226025-30226061)
chr4 (216-256)||(37927787-37927827)
chr4 (315-353)||(13770468-13770506)
chr4 (146-187)||(39606405-39606446)
chr4 (205-265)||(16608609-16608669)
[»] chr1 (22 HSPs)
chr1 (146-352)||(50099538-50099746)
chr1 (146-352)||(50303874-50304083)
chr1 (145-348)||(44592517-44592723)
chr1 (201-345)||(36156901-36157044)
chr1 (201-352)||(43410927-43411078)
chr1 (212-349)||(27773554-27773690)
chr1 (216-353)||(43022554-43022690)
chr1 (212-281)||(10619794-10619863)
chr1 (215-281)||(39618447-39618513)
chr1 (212-265)||(44429839-44429892)
chr1 (212-265)||(7493398-7493451)
chr1 (212-281)||(15757407-15757476)
chr1 (203-278)||(26632988-26633062)
chr1 (231-278)||(29681098-29681145)
chr1 (300-352)||(26633083-26633135)
chr1 (145-189)||(43022451-43022495)
chr1 (202-265)||(6764477-6764540)
chr1 (315-350)||(48365957-48365992)
chr1 (204-265)||(10989478-10989539)
chr1 (315-352)||(39618016-39618053)
chr1 (319-352)||(44429733-44429766)
chr1 (316-352)||(33409366-33409402)
[»] chr3 (16 HSPs)
chr3 (202-352)||(26769761-26769911)
chr3 (146-353)||(22775200-22775410)
chr3 (201-353)||(37057514-37057665)
chr3 (203-348)||(37224382-37224526)
chr3 (215-281)||(30500933-30500999)
chr3 (215-281)||(35238720-35238786)
chr3 (212-281)||(46823535-46823604)
chr3 (149-189)||(26770308-26770348)
chr3 (215-265)||(17653349-17653399)
chr3 (212-278)||(52724605-52724671)
chr3 (212-265)||(30342664-30342717)
chr3 (213-265)||(15871364-15871416)
chr3 (212-263)||(35734441-35734492)
chr3 (318-352)||(52725283-52725317)
chr3 (146-190)||(37057456-37057500)
chr3 (154-190)||(37224332-37224368)
[»] chr2 (19 HSPs)
chr2 (146-352)||(2096034-2096242)
chr2 (212-278)||(21613376-21613442)
chr2 (212-278)||(41732625-41732691)
chr2 (212-265)||(1043355-1043408)
chr2 (212-265)||(9190344-9190397)
chr2 (212-264)||(36314577-36314629)
chr2 (215-265)||(1593092-1593142)
chr2 (203-265)||(14160593-14160655)
chr2 (212-253)||(5382702-5382743)
chr2 (212-265)||(10585101-10585154)
chr2 (212-263)||(9754040-9754091)
chr2 (315-352)||(1043249-1043286)
chr2 (315-352)||(21612730-21612767)
chr2 (203-263)||(14950634-14950694)
chr2 (204-265)||(8230407-8230468)
chr2 (315-352)||(9190238-9190275)
chr2 (233-278)||(21278634-21278679)
chr2 (204-265)||(35524944-35525005)
chr2 (212-240)||(12563840-12563868)
[»] chr6 (9 HSPs)
chr6 (147-351)||(7590437-7590643)
chr6 (212-265)||(3886141-3886194)
chr6 (212-265)||(583320-583373)
chr6 (212-281)||(13703075-13703144)
chr6 (212-265)||(29363906-29363959)
chr6 (212-260)||(30386828-30386876)
chr6 (215-265)||(34729509-34729559)
chr6 (221-277)||(5122304-5122360)
chr6 (315-347)||(30383576-30383608)
[»] chr5 (16 HSPs)
chr5 (146-348)||(39570764-39570967)
chr5 (201-349)||(12947237-12947386)
chr5 (201-278)||(6735901-6735978)
chr5 (212-278)||(21360905-21360971)
chr5 (212-281)||(17769322-17769391)
chr5 (221-276)||(12933097-12933152)
chr5 (201-248)||(42092340-42092387)
chr5 (211-281)||(13517243-13517312)
chr5 (212-265)||(39685690-39685744)
chr5 (315-352)||(21361580-21361617)
chr5 (315-352)||(39684409-39684446)
chr5 (296-351)||(42091883-42091938)
chr5 (295-349)||(12933025-12933079)
chr5 (204-265)||(3498715-3498776)
chr5 (146-190)||(12947400-12947444)
chr5 (233-281)||(13734616-13734664)
[»] chr7 (31 HSPs)
chr7 (201-353)||(23333244-23333395)
chr7 (212-352)||(27571543-27571682)
chr7 (149-349)||(27098832-27099031)
chr7 (149-349)||(27179272-27179471)
chr7 (216-352)||(33036024-33036159)
chr7 (212-278)||(41532412-41532478)
chr7 (212-265)||(45810001-45810054)
chr7 (215-281)||(2410955-2411021)
chr7 (212-278)||(38892164-38892229)
chr7 (212-265)||(83979-84032)
chr7 (215-281)||(36558351-36558417)
chr7 (215-265)||(48609467-48609517)
chr7 (212-265)||(758572-758625)
chr7 (212-265)||(33335986-33336039)
chr7 (212-265)||(46212038-46212091)
chr7 (231-278)||(5437160-5437207)
chr7 (315-352)||(303922-303959)
chr7 (315-352)||(5481251-5481288)
chr7 (232-281)||(19532357-19532406)
chr7 (212-281)||(37205792-37205860)
chr7 (212-253)||(39719311-39719352)
chr7 (315-352)||(41533087-41533124)
chr7 (213-261)||(2826749-2826797)
chr7 (319-352)||(2830162-2830195)
chr7 (233-278)||(11468622-11468667)
chr7 (315-352)||(36558810-36558847)
chr7 (144-189)||(38892254-38892299)
chr7 (204-265)||(45855378-45855439)
chr7 (146-190)||(23333409-23333453)
chr7 (146-190)||(27571706-27571750)
chr7 (319-347)||(38892096-38892124)
[»] chr8 (10 HSPs)
chr8 (146-346)||(33538307-33538509)
chr8 (212-265)||(18606019-18606072)
chr8 (212-281)||(21441939-21442008)
chr8 (212-281)||(4072573-4072642)
chr8 (212-281)||(41323527-41323596)
chr8 (215-278)||(10713855-10713918)
chr8 (215-278)||(30932153-30932216)
chr8 (315-352)||(10718584-10718621)
chr8 (205-265)||(1233787-1233847)
chr8 (201-277)||(7559100-7559176)
[»] scaffold0049 (3 HSPs)
scaffold0049 (212-265)||(46875-46928)
scaffold0049 (212-265)||(15003-15056)
scaffold0049 (315-352)||(15811-15848)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 359 - 554
Target Start/End: Complemental strand, 27649157 - 27648962
Alignment:
Q  359 gatcaaatgatgattgtttaaaaagcattgagtgaaacttttagtagaaagaaagagcttcagtaatgaagcatcgatttcaataacccttatttgtttt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27649157 gatcaaatgatgattgtttaaaaagcattgagtgaaacttttagtagaaagaaagagcttcagtaatgaagcatcgctttcaataacccttatttgtttt 27649058  T
Q  459 tgcattatgtttatttgctaaaattgtcttatgtggaaaggcttttgttgttgttgtttgtttaattgctaaaaatacatatatgttcttctctct 554  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27649057 tgcattatgtttagttgctaaaattgccttatgtggaaaggcttttgttgttgttgtttgtttaattgctaaaaatacatatatgttcttatctct 27648962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 146 - 354
Target Start/End: Complemental strand, 22376045 - 22375835
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn--ttattgaatttgtaggtatatttttatgtttagctacccctaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  22376045 caggggcgaatgcttgttaaagagaggggtagctatggctaccccaaaaaaaaaaaattattgaatttgtaggtatatttttatgtttagctacccctaa 22375946  T
Q  244 taatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagct 343  Q
    ||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22375945 taatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttggttactttcgggtggccacctcataaaattattgctagct 22375846  T
Q  344 tcgccgctggt 354  Q
    |||||||||||    
T  22375845 tcgccgctggt 22375835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 146 - 352
Target Start/End: Complemental strand, 54508717 - 54508510
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnntt-attgaatttgtaggtatatttttatgtttagctacccctaat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||           || ||||||||||||||||||||||||||||||||||||||||||    
T  54508717 caggggcgaatgcttgttaaagagaggggtagctatggctacccgaaaaaaaaattttattgaatttgtaggtatatttttatgtttagctacccctaat 54508618  T
Q  245 aatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagctt 344  Q
    |||||||||||||||||||||||||||||||||||||| ||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54508617 aatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttgattactttcgggtggccacctcataaaattattgctagctt 54508518  T
Q  345 cgccgctg 352  Q
    ||||||||    
T  54508517 cgccgctg 54508510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 18493942 - 18493731
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnntta----ttgaatttgtaggtatatttttatgtttagctacccct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |    ||||||||||||||||||||||||||||||||||||||    
T  18493942 caggggcgaatgcttgttaaagagaggggtagctatggctaccccaaaaaaaaaaaaaaaaattgaatttgtaggtatatttttatgtttagctacccct 18493843  T
Q  242 aataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctag 341  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  18493842 aataatatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttggttactttcgggtggccacctcataaaattattgctag 18493743  T
Q  342 cttcgccgctgg 353  Q
    ||||||||||||    
T  18493742 cttcgccgctgg 18493731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 145 - 351
Target Start/End: Complemental strand, 34021459 - 34021248
Alignment:
Q  145 acaggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn-----ttattgaatttgtaggtatatttttatgtttagctaccc 239  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||               |||||||||||||||||||||||||||||||||||||||    
T  34021459 acaggggcgaatgcttgttaaagagaggggtagttatggctaccccaaaaaaaaaaaaaaattattgaatttgtaggtatatttttatgtttagctaccc 34021360  T
Q  240 ctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgct 339  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||| |||||||||||||||||||||||||||    
T  34021359 ctaatagtatatatttggctaccccaggttcgattttagatgtagtcatttttttatgactttggttacttttgggtggccacctcataaaattattgct 34021260  T
Q  340 agcttcgccgct 351  Q
    ||||||||||||    
T  34021259 agcttcgccgct 34021248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 144 - 352
Target Start/End: Original strand, 4608054 - 4608263
Alignment:
Q  144 gacaggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnntt--attgaatttgtaggtatatttttatgtttagctacccct 241  Q
    |||||||||||||||||||  |||||||||||||||||||||||||           ||  |||||||||||||||||||||||||||||||||||||||    
T  4608054 gacaggggcgaatgcttgtataagagaggggtagctatggctacccaaaaaaataaattttattgaatttgtaggtatatttttatgtttagctacccct 4608153  T
Q  242 aataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctag 341  Q
    ||||||||||||||||||||| || ||||||||||||||||  |||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  4608154 aataatatatatttggctacctcaagttcgattttagatgtaatca-ttttttatgactttggttactttcgggtggccacctcataaaattattgctag 4608252  T
Q  342 cttcgccgctg 352  Q
    |||||||||||    
T  4608253 cttcgccgctg 4608263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 149 - 354
Target Start/End: Complemental strand, 23237663 - 23237456
Alignment:
Q  149 gggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn---ttattgaatttgtaggtatatttttatgtttagctacccctaata 245  Q
    ||||||||||||||  ||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||    
T  23237663 gggcgaatgcttgtacaagagaggggtagctatggctaccccaaaaaaataaattttattgaatttgtaggtatatttttatgtttagctacccctaata 23237564  T
Q  246 atatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagcttc 345  Q
    |||||||||||||| ||||| ||||||||||||||||  | |       ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23237563 atatatatttggctgccccaagttcgattttagatgtaat-aattttttatgactttggttacttttgggtggccacctcataaaattattgctagcttc 23237465  T
Q  346 gccgctggt 354  Q
    |||||||||    
T  23237464 gccgctggt 23237456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 27649285 - 27649177
Alignment:
Q  16 cacatactctactagaaagggttaaatatttgttttttaaaaattagttcatatttatatttgatttctttcaattgctgctgcatgctgtgttttgatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  27649285 cacatactctactagaaagggttaaatatttgttttttaaaaattagttcatatttatatttgatttcttttaattgctgctgcatgttgtgttttgatc 27649186  T
Q  116 atcctagca 124  Q
    |||||||||    
T  27649185 atcctagca 27649177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 144 - 348
Target Start/End: Original strand, 27512852 - 27513058
Alignment:
Q  144 gacaggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn---ttattgaatttgtaggtatatttttatgtttagctacccc 240  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||             ||||||| || |||||||||||||||||||||||||||||    
T  27512852 gacaggggccaatgcttgtacaagagaggggtagctatggctaccccaaaaaaataaattttattgagttagtaggtatatttttatgtttagctacccc 27512951  T
Q  241 taataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgcta 340  Q
    ||||||||||||||||||||||||| |||||||||||| |||  | |       ||||||||||||||||||||||||||||||||||||||||||||||    
T  27512952 taataatatatatttggctaccccaagttcgattttaggtgtaat-aattttttatgactttggttactttcgggtggccacctcataaaattattgcta 27513050  T
Q  341 gcttcgcc 348  Q
    ||||||||    
T  27513051 gcttcgcc 27513058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 201 - 354
Target Start/End: Complemental strand, 39606388 - 39606236
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgact 300  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||   | |       ||||||    
T  39606388 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgattttaggtgcaat-aattttttatgact 39606290  T
Q  301 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctggt 354  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39606289 ttggttactttcggatggccacctcataaaattattgctagcttcgccgctggt 39606236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 32595189 - 32595039
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgact 300  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||   | |       ||||||    
T  32595189 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgcaat-aattttttatgact 32595091  T
Q  301 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  32595090 ttggtttctttcggatggccacctcaaaaaattattgctagcttcgccgctg 32595039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 44223026 - 44222960
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||    
T  44223026 gtaggtatatttttatgtttaactacccctaataatatatatttggttgccccaagttcgattttag 44222960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 18502008 - 18502133
Alignment:
Q  224 ttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacc 323  Q
    ||||||||| |||||||| ||||||||||||||||||||| | |||||||||||| |||  | |        ||| ||| |||| ||| |||||||||||    
T  18502008 ttatgtttaactacccctgataatatatatttggctaccctaagttcgattttaggtgtaat-aattttttgtgaatttcgttagttttgggtggccacc 18502106  T
Q  324 tcataaaattattgctagcttcgccgc 350  Q
    |||||||||||||||||||||||||||    
T  18502107 tcataaaattattgctagcttcgccgc 18502133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 13768529 - 13768582
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  13768529 gtaggtatatttttatatttagctacccctaataatatatatttagctacccca 13768582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 21733870 - 21733947
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    |||||||||  |||||||||  | ||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  21733870 ttattgaataagtaggtatacatatatatttagctacccctaataatatatagttggctaccccaagtttgattttag 21733947  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 43892933 - 43892868
Alignment:
Q  216 gtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||  ||||||||||    
T  43892933 gtatatttttatatttagctacccctaataatatatatttagctgccccaagtttaattttagatg 43892868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 46721870 - 46721923
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  46721870 gtagggatatttttatttttagctacccctaataatatatatttagctacccca 46721923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 20618746 - 20618810
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||  |||||||||||||| | || |||||||||||||||||||| |||||||||||||    
T  20618746 ttattgaatgagtaggtatatttttgtattaagctacccctaataatatatgtttggctacccca 20618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 30226736 - 30226670
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| |||| ||| ||||| ||||||||||||||||||| ||||||| |||||| |||||    
T  30226736 gtaggtatattattatatttggctactcctaataatatatatttggttaccccatgttcgactttag 30226670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 20167499 - 20167576
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    |||||||||  ||| |||||||||||| || ||||||| ||  |||||||||||||||||||||| ||| ||||||||    
T  20167499 ttattgaatgagtaagtatatttttatattaagctacctctggtaatatatatttggctaccccaagtttgattttag 20167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 8762921 - 8762860
Alignment:
Q  204 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| ||| ||||||||||||| |||||||||||| ||||| | |||||| |||||||||    
T  8762921 ttgaatatgttggtatatttttatatttagctaccccaaataaaaaatatttagctacccca 8762860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 23609346 - 23609297
Alignment:
Q  216 gtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||| ||||    
T  23609346 gtatatttttatattttgctatccctaataatatatatttggctatccca 23609297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 32824680 - 32824627
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||| ||||||||| ||||| ||||||||||| ||||    
T  32824680 gtaggtatatttttatatttaactacccctagtaataaatatttggctatccca 32824627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 30226061 - 30226025
Alignment:
Q  318 gccacctcataaaattattgctagcttcgccgctggt 354  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30226061 gccacctcataaaaatattgctagcttcgccgctggt 30226025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 37927787 - 37927827
Alignment:
Q  216 gtatatttttatgtttagctacccctaataatatatatttg 256  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  37927787 gtatatttttatatttagctacccataataatatatatttg 37927827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 13770468 - 13770506
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctgg 353  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  13770468 gtggccacctcatagaattattgctagctttgccgctgg 13770506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 39606446 - 39606405
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctac 187  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  39606446 caggggcgaatgcttgtacaggagaggggtagctatggctac 39606405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 16608669 - 16608609
Alignment:
Q  205 tgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| || ||||||| ||||| |||||||||||| ||||||| |||||  |||||||||    
T  16608669 tgaattggttggtatatatttatatttagctaccccaaataataaatattgagctacccca 16608609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 50099538 - 50099746
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn--ttattgaatttgtaggtatatttttatgtttagctacccctaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  50099538 caggggcgaatgcttgttaaagagaggggtagctatggctaccccaaaaaaaaaaaattattgaatttgtaggtatatttttatgtttagctacccctaa 50099637  T
Q  244 taatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagct 343  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50099638 taatatatatttgactaccccaggttcgattttagatgtagtcatttttttatgactttggttactttcgggtggccacctcataaaattattgctagct 50099737  T
Q  344 tcgccgctg 352  Q
    |||||||||    
T  50099738 tcgccgctg 50099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 146 - 352
Target Start/End: Complemental strand, 50304083 - 50303874
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnntt---attgaatttgtaggtatatttttatgtttagctaccccta 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||||          ||   ||||||||||||||||||||||||||||||||||||||||    
T  50304083 caggggcgaatgcttgttaaagagaggggtagttatggctaccccaatttttttttttttattgaatttgtaggtatatttttatgtttagctaccccta 50303984  T
Q  243 ataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagc 342  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||       |||||||||||||||||||| |||||||||||||||||||||||||||    
T  50303983 ataatatatatttggctatctcaggttcgattttagatgtagtcatttttttatgactttggttactttcggatggccacctcataaaattattgctagc 50303884  T
Q  343 ttcgccgctg 352  Q
    ||||||||||    
T  50303883 ttcgccgctg 50303874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 145 - 348
Target Start/End: Original strand, 44592517 - 44592723
Alignment:
Q  145 acaggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn----ttattgaatttgtaggtatatttttatgtttagctacccc 240  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||              ||||||| || |||||||||||||||||||||||||||||    
T  44592517 acaggggcgaatgcttgtacaagagaggggtagctatggctaccccaaaaaaaataaactttattgagttagtaggtatatttttatgtttagctacccc 44592616  T
Q  241 taataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgcta 340  Q
    ||||||||||||||||||||||||| ||| |||||||| |||  | |       |||||||| |||||||||||||||||||||||||||||||||||||    
T  44592617 taataatatatatttggctaccccaagtttgattttaggtgtaat-aattttttatgacttttgttactttcgggtggccacctcataaaattattgcta 44592715  T
Q  341 gcttcgcc 348  Q
    ||||||||    
T  44592716 gcttcgcc 44592723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 201 - 345
Target Start/End: Complemental strand, 36157044 - 36156901
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgact 300  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||  | |       ||||||    
T  36157044 ttattgaatttataggtatatttttatgcttagctacccctaataatatatatttggctaccccaagttcaattttaggtgtaat-aatttcttatgact 36156946  T
Q  301 ttggttactttcgggtggccacctcataaaattattgctagcttc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36156945 ttggttactttcgggtggccacctcataaaattattgctagcttc 36156901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 43410927 - 43411078
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgact 300  Q
    ||||||| || |||||||||||||||| |||||||| |||||||||||||||||||| ||||| | ||| ||||||||||||  | |       ||||||    
T  43410927 ttattgagttagtaggtatatttttatatttagctatccctaataatatatatttggttaccctaagtttgattttagatgtaataatttttttatgact 43411026  T
Q  301 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  43411027 ttggttactttcgggtggctacctcataaaattattgctagcctcgctgctg 43411078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 212 - 349
Target Start/End: Original strand, 27773554 - 27773690
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttacttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||  | |        |||||| ||| |||||    
T  27773554 gtaggtatatttttatgtttagctacccctaataatatatatttgcctaccccaagttcgattttaggtgtaat-aattttttgtgacttcggtaacttt 27773652  T
Q  312 cgggtggccacctcataaaattattgctagcttcgccg 349  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27773653 cgggtggctacctcataaaattattgctagcttcgccg 27773690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 216 - 353
Target Start/End: Original strand, 43022554 - 43022690
Alignment:
Q  216 gtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcggg 315  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||  | |       |||| |||| ||||||||||     
T  43022554 gtatatttttatgtttaactacccctaataatatatatttggctacccaaagttcgattttagatgtaat-aattttttatgattttgattactttcgga 43022652  T
Q  316 tggccacctcataaaattattgctagcttcgccgctgg 353  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  43022653 tggccacctcataaaattattgcaagcttcgccgctgg 43022690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 10619794 - 10619863
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||    
T  10619794 gtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttagatg 10619863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 39618513 - 39618447
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  39618513 ggtatatttttatattaagctacccctaataatatatatttggctaccccaagtttgcttttagatg 39618447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 44429892 - 44429839
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  44429892 gtaggtatatttttatatttagctacccctaataatatttatttggctacccca 44429839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 7493398 - 7493451
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||||| | ||||||||||||||||||||||||    
T  7493398 gtaggtatatttttatatttagctacctccaataatatatatttggctacccca 7493451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 15757407 - 15757476
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| |||| ||||||||||||||||||||||  |||||||| |||  ||||||||||    
T  15757407 gtaggtatatttttatatttatctacccctaataatatatatttaactaccccaagtttaattttagatg 15757476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 26632988 - 26633062
Alignment:
Q  203 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||| || |||||||||||||||||||||| ||||  ||||||||||||||||| |||| || ||||||||||||    
T  26632988 attgagttagtaggtatatttttatgtttagttacct-taataatatatatttggttacctcaagttcgattttag 26633062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 29681098 - 29681145
Alignment:
Q  231 tagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  29681098 tagctacccctgataatatatatttggctaccccaagtttgattttag 29681145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 26633083 - 26633135
Alignment:
Q  300 tttggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||| ||| ||||||||| ||| ||||||||||| ||||||||||||||||||    
T  26633083 tttgattaatttcgggtgaccatctcataaaattgttgctagcttcgccgctg 26633135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 43022451 - 43022495
Alignment:
Q  145 acaggggcgaatgcttgttaaagagaggggtagctatggctaccc 189  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||    
T  43022451 acaggggcgaatgtttgtacaagagaggggtagctatggctaccc 43022495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 6764477 - 6764540
Alignment:
Q  202 tattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||  ||| |||||||||| | || ||||||| ||||||||||||||||||||| ||||    
T  6764477 tattgaatgagtatgtatatttttgtattaagctaccgctaataatatatatttggctatccca 6764540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 48365992 - 48365957
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgc 350  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48365992 gtggccacctcataaaaatattgctagcttcgccgc 48365957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 10989539 - 10989478
Alignment:
Q  204 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  10989539 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 10989478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 39618053 - 39618016
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  39618053 gtggccacctcataaaaatattactagcttcgccgctg 39618016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 44429766 - 44429733
Alignment:
Q  319 ccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||| |||||||||||||||||||||||    
T  44429766 ccacctcatagaattattgctagcttcgccgctg 44429733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 33409402 - 33409366
Alignment:
Q  316 tggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||||| |||||||||||||| |||||    
T  33409402 tggccacctcataaaaatattgctagcttcgtcgctg 33409366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 202 - 352
Target Start/End: Complemental strand, 26769911 - 26769761
Alignment:
Q  202 tattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       |||||||    
T  26769911 tattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttagatgtagtcatttttttatgactt 26769812  T
Q  302 tggttactttcgggtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26769811 tggttacttttgggtggccacctcataaaattattgctagcttcgccgctg 26769761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 22775410 - 22775200
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctacccc----nnnnnnnnnnttattgaatttgtaggtatatttttatgtttagctacccct 241  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||    
T  22775410 caggggtgaatgcttgtacaagagaggggtagctatggctaccccaaaaaaatttttttttattgaatttgtaggtatatttttatgtttagctacccct 22775311  T
Q  242 aataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctag 341  Q
    |||||||||||||||||||||||| |||||||||||| |||  | |       |||||||||||||||||||||||||||||||||||||||||||||||    
T  22775310 aataatatatatttggctaccccaagttcgattttaggtgtaat-aattttttatgactttggttactttcgggtggccacctcataaaattattgctag 22775212  T
Q  342 cttcgccgctgg 353  Q
    ||||||||||||    
T  22775211 cttcgccgctgg 22775200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 201 - 353
Target Start/End: Original strand, 37057514 - 37057665
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgact 300  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||   | |       || |||    
T  37057514 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgcaat-aactttttataact 37057612  T
Q  301 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctgg 353  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37057613 ttggttactttcgggtggtcacctcataaaattattgctagcttcgccgctgg 37057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 203 - 348
Target Start/End: Original strand, 37224382 - 37224526
Alignment:
Q  203 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgacttt 302  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||  | |       ||||||||    
T  37224382 attgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctatcccaagttcgattttaggtgtaat-aattttttatgacttt 37224480  T
Q  303 ggttactttcgggtggccacctcataaaattattgctagcttcgcc 348  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  37224481 tgttactttcgggtggccacctcataaaattattgctagcttcgcc 37224526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 30500999 - 30500933
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  30500999 ggtatatttttatattaagctacccctaataatatatatctggctaccccaagtttgattttagatg 30500933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 35238786 - 35238720
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  35238786 ggtatatttttatattaagctacccctaataatatatatttggctaccccaagtttaattttagatg 35238720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 46823535 - 46823604
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||  ||||||||||    
T  46823535 gtaggtatatttttatatttagctacccctaataatatataattagctaccccaagtttaattttagatg 46823604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 26770348 - 26770308
Alignment:
Q  149 gggcgaatgcttgttaaagagaggggtagctatggctaccc 189  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26770348 gggcgaatgcttgttaaagagaggggtagctatggctaccc 26770308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 17653399 - 17653349
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  17653399 ggtatatttttatatttaactacccctaataatatatatttagctacccca 17653349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 52724605 - 52724671
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| |||| |||  ||| |||||||||||||||||||||||||||| |||||| |||||    
T  52724605 gtaggtatattattatatttgactatccctaataatatatatttggctaccccatgttcgactttag 52724671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 30342664 - 30342717
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||| |||||||||| |||| ||||| |||||||||||||||| |||||||||    
T  30342664 gtagggatatttttatttttaactacctctaataatatatatttagctacccca 30342717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 15871416 - 15871364
Alignment:
Q  213 taggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||||||||| ||||||||||| || |||| |||||||||||| ||||    
T  15871416 taggtatatttttatatttagctacccttagtaatttatatttggctatccca 15871364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 35734492 - 35734441
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccc 263  Q
    |||||||||||||||| ||||| ||||| ||||||||| ||||| |||||||    
T  35734492 gtaggtatatttttatatttagttacccttaataatatgtatttagctaccc 35734441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 52725283 - 52725317
Alignment:
Q  318 gccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||| ||||||||||||||||||||    
T  52725283 gccacctcataaaaatattgctagcttcgccgctg 52725317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 37057456 - 37057500
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctacccc 190  Q
    |||||||||||||||||  | |||||||||||||||||| |||||    
T  37057456 caggggcgaatgcttgtacaggagaggggtagctatggccacccc 37057500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 37224332 - 37224368
Alignment:
Q  154 aatgcttgttaaagagaggggtagctatggctacccc 190  Q
    |||||||||  ||||||||||||||||||||||||||    
T  37224332 aatgcttgtacaagagaggggtagctatggctacccc 37224368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 6e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 2096034 - 2096242
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn---ttattgaatttgtaggtatatttttatgtttagctaccccta 242  Q
    |||||||||||||||||  ||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  2096034 caggggcgaatgcttgtacaagagaggggtagctatggctaccccaaaaaaataaattttattgaatttgtaggtatatttttatgtttagctaccccta 2096133  T
Q  243 ataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagc 342  Q
    ||||||||||||||||||||||| |||||||||||| |||  | |       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2096134 ataatatatatttggctaccccaagttcgattttaggtgtcat-aattttttatgactttggttactttcgggtggccacctcataaaattattgctagc 2096232  T
Q  343 ttcgccgctg 352  Q
    ||||||||||    
T  2096233 ttcgccgctg 2096242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 21613442 - 21613376
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  21613442 gtaggtatattattatatttggctacccctaataatatatatttggctaccccatgttcgactttag 21613376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 41732691 - 41732625
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  41732691 gtaggtatgtttttatatgtagctacccctaataatatatatttggctaccccaagttagattttag 41732625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 1043408 - 1043355
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  1043408 gtaggtatatttttatatttagctacccctaataatatttatttggctacccca 1043355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 9190397 - 9190344
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9190397 gtaggtatatttttatatttagctacccctaataatatttatttggctacccca 9190344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 36314629 - 36314577
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccc 264  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  36314629 gtaggtatatttttatatttagttacccctaataatatatatttggctacccc 36314577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 1593142 - 1593092
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  1593142 ggtatatttttatatttagttacccctaataatatatatttggctacccca 1593092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 14160655 - 14160593
Alignment:
Q  203 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||  |||||||||||| |||  ||||||||||||||||||||||| ||||||||||||    
T  14160655 attgaataagtaggtatatttgtatacttagctacccctaataatatatagttggctacccca 14160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 5382743 - 5382702
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatat 253  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  5382743 gtaggtatatttttatatttagctacccctaataatatatat 5382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 10585101 - 10585154
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  10585101 gtagggatatttttatttttagctacccctaataatatatatttagctatccca 10585154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 9754040 - 9754091
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccc 263  Q
    |||||||||||||||| ||||||||||  |||||||||||| ||||||||||    
T  9754040 gtaggtatatttttatatttagctaccgttaataatatataattggctaccc 9754091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 1043286 - 1043249
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||| |||||||||||||||||||||||    
T  1043286 gtggccacctcatagaattattgctagcttcgccgctg 1043249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 21612767 - 21612730
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21612767 gtggccacctcataaaaatattgctagcttcgccgctg 21612730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 14950694 - 14950634
Alignment:
Q  203 attgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccc 263  Q
    |||||||  |||||||||||| |||  ||||||||||||||||||| ||| ||||||||||    
T  14950694 attgaataagtaggtatatttgtatacttagctacccctaataatacatagttggctaccc 14950634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 8230468 - 8230407
Alignment:
Q  204 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  8230468 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 8230407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 9190275 - 9190238
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  9190275 gtggccacctcatagaattattgctagcttcaccgctg 9190238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 21278634 - 21278679
Alignment:
Q  233 gctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||||||||| |||||| |||||||| ||| ||||||||    
T  21278634 gctacccctaataatatttatttgactaccccaagtttgattttag 21278679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 35525005 - 35524944
Alignment:
Q  204 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  35525005 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 35524944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 12563868 - 12563840
Alignment:
Q  212 gtaggtatatttttatgtttagctacccc 240  Q
    |||||||||||||||||||||||||||||    
T  12563868 gtaggtatatttttatgtttagctacccc 12563840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 147 - 351
Target Start/End: Complemental strand, 7590643 - 7590437
Alignment:
Q  147 aggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn---ttattgaatttgtaggtatatttttatgtttagctacccctaa 243  Q
    ||||||||||||||||  |||||||||||||||||| |||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  7590643 aggggcgaatgcttgtccaagagaggggtagctatgactaccccaaaaaaaaaaaaattattgaatttgtaggtatatttttatgtttagctacccctaa 7590544  T
Q  244 taatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagct 343  Q
    |||||||||||||||||||||| ||||||||||||||||  | |       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7590543 taatatatatttggctaccccaagttcgattttagatgtaat-aattttttatgactttggttactttcgggtggccacctcataaaattattgctagct 7590445  T
Q  344 tcgccgct 351  Q
    ||||||||    
T  7590444 tcgccgct 7590437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 3886141 - 3886194
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3886141 gtaggtatatttttatatttagctacccctaataatatatatttggctacccca 3886194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 583373 - 583320
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  583373 gtaggtatatttttatatttagctacccctaataatatatatttggttacccca 583320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 13703075 - 13703144
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||  ||||||||||    
T  13703075 gtaggtatatttttatatttagctacccctaataatatatatttagctacctcaagtttaattttagatg 13703144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 29363959 - 29363906
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  29363959 gtaggtatatttttatatttagctactcctaataatatatatttagctacccca 29363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 30386876 - 30386828
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggcta 260  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  30386876 gtaggtatatttttatatttagctacccctaataatatatatttagcta 30386828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 34729509 - 34729559
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  34729509 ggtatatttttatatttagctacccctaatagtatatatttagctacccca 34729559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 5122360 - 5122304
Alignment:
Q  221 tttttatgtttagctacccctaataatatatatttggctaccccaggttcgatttta 277  Q
    ||||||| | ||| ||||||||||||||||| |||| |||||||| |||||||||||    
T  5122360 tttttatatatagttacccctaataatatatttttgactaccccaagttcgatttta 5122304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 30383608 - 30383576
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgc 347  Q
    |||||||||||||| ||||||||||||||||||    
T  30383608 gtggccacctcatagaattattgctagcttcgc 30383576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 146 - 348
Target Start/End: Original strand, 39570764 - 39570967
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn--ttattgaatttgtaggtatatttttatgtttagctacccctaa 243  Q
    |||||||||||||||||  ||||||||||||||||||||||||||            ||||||| || ||||||||||||||||||||||||||||||||    
T  39570764 caggggcgaatgcttgtacaagagaggggtagctatggctaccccaaaaaaaaaaaattattgagttagtaggtatatttttatgtttagctacccctaa 39570863  T
Q  244 taatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagct 343  Q
    |||||||||||||||||||||| |||||||||||| |||  | |       |||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  39570864 taatatatatttggctaccccaagttcgattttaggtgtaat-aattttttatgacttttgttactttcggatggccacgtcataaaattattgctagct 39570962  T
Q  344 tcgcc 348  Q
    |||||    
T  39570963 tcgcc 39570967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 201 - 349
Target Start/End: Complemental strand, 12947386 - 12947237
Alignment:
Q  201 ttattgaatttgtaggtatattttt-atgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgac 299  Q
    ||||||| || |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||   |||  | |       |||||    
T  12947386 ttattgagttagtaggtatattttttatgtttagctacctctaataatatatattttgctaccccaagttcgattttttgtgtaataatttttttatgac 12947287  T
Q  300 tttggttactttcgggtggccacctcataaaattattgctagcttcgccg 349  Q
    ||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  12947286 tttagttattttcgggtggccacctcataaaattattgttagcttcgccg 12947237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 6735901 - 6735978
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  6735901 ttattgagttagtaggtatatttttatatttagctacctctaataatatatatttggctaccccaagttcgattttag 6735978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 21360905 - 21360971
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  21360905 gtaggtatattattatatttggctacccctaataatatatatttggctaccccatgttcgattttag 21360971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 17769391 - 17769322
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||    
T  17769391 gtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttagatg 17769322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 12933152 - 12933097
Alignment:
Q  221 tttttatgtttagctacccctaataatatatatttggctaccccaggttcgatttt 276  Q
    |||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||    
T  12933152 tttttatgtttagctacctctaataatatatattttgttaccccaagttcgatttt 12933097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 42092387 - 42092340
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataata 248  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  42092387 ttattgagttagtaggtatatttttatgtttagctacccctaataata 42092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 13517243 - 13517312
Alignment:
Q  211 tgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||  |||||||| |||  ||||||||||    
T  13517243 tgtaggtatatttttatatttagcta-ccctaataatatatatttaactaccccaagtttaattttagatg 13517312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 39685744 - 39685690
Alignment:
Q  212 gtaggtatatttttatgtttagctaccc-ctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||| || |||||||||||||||| |||||||||    
T  39685744 gtaggtatatttttatatttagctatcctctaataatatatatttagctacccca 39685690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 21361580 - 21361617
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21361580 gtggccacctcataaaaatattgctagcttcgccgctg 21361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 39684446 - 39684409
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39684446 gtggccacctcatagaattattgctagcttcgccgctg 39684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 42091938 - 42091883
Alignment:
Q  296 tgactttggttactttcgggtggccacctcataaaattattgctagcttcgccgct 351  Q
    ||||||||||||| ||||||| | ||| | ||||||||||||||||||| ||||||    
T  42091938 tgactttggttaccttcgggtagtcactttataaaattattgctagctttgccgct 42091883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 12933079 - 12933025
Alignment:
Q  295 atgactttggttactttcgggtggccacctcataaaattattgctagcttcgccg 349  Q
    |||||||| |||| ||||||||| |||||| |||||||||||  |||||||||||    
T  12933079 atgactttagttattttcgggtgaccaccttataaaattattattagcttcgccg 12933025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 3498776 - 3498715
Alignment:
Q  204 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| ||| ||||| ||||||| |||||||||||| ||||| | |||||| |||||||||    
T  3498776 ttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctacccca 3498715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 12947444 - 12947400
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctacccc 190  Q
    ||||||||||||||| |  ||||||||| ||||||||||||||||    
T  12947444 caggggcgaatgcttatacaagagagggatagctatggctacccc 12947400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 13734616 - 13734664
Alignment:
Q  233 gctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||||||||||||||| || || | ||| |||||||||||    
T  13734616 gctacccctaataatatatatttggttatcctaagtttgattttagatg 13734664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 23333395 - 23333244
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgact 300  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||   | |       || |||    
T  23333395 ttattgagttagtaggtatatttttatgtttagctacccctaataatatatatttggctactccaagttcgattttaggtgcaat-aattttttataact 23333297  T
Q  301 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctgg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333296 ttggttactttcgggtggccacctcataaaattattgctagcttcgccgctgg 23333244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 212 - 352
Target Start/End: Complemental strand, 27571682 - 27571543
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttacttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||  | |        ||||||||||||||||    
T  27571682 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccctatgttcgattttaggtgtaat-aattttttgtgactttggttacttt 27571584  T
Q  312 cgggtggccacctcataaaattattgctagcttcgccgctg 352  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  27571583 agggtggccacctcataaaattattgctagcttcgccgctg 27571543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 149 - 349
Target Start/End: Complemental strand, 27099031 - 27098832
Alignment:
Q  149 gggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnnttattgaatttgtaggtatatttttatgtttagctacccctaataata 248  Q
    ||||||||||||||  || | ||||||||||||||||||||           ||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  27099031 gggcgaatgcttgtacaacaaaggggtagctatggctacccaaaaaaaaaaattattgagttagtaggtttatatttatgtttagctacccctaataata 27098932  T
Q  249 tatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagcttcgcc 348  Q
    |||||||||||| ||||  ||  |||||| ||||  | |        |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  27098931 tatatttggctatcccaaatttaattttaaatgtaat-aattttttgtgactttgattactttggggtggccacctcataaaattattgttagcttcgcc 27098833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 149 - 349
Target Start/End: Original strand, 27179272 - 27179471
Alignment:
Q  149 gggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnnttattgaatttgtaggtatatttttatgtttagctacccctaataata 248  Q
    ||||||||||||||  || | ||||||||||||||||||||           ||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  27179272 gggcgaatgcttgtacaacaaaggggtagctatggctacccaaaaaaaaaaattattgagttagtaggtttatatttatgtttagctacccctaataata 27179371  T
Q  249 tatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagcttcgcc 348  Q
    |||||||||||| ||||  ||  |||||| ||||  | |        |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  27179372 tatatttggctatcccaaatttaattttaaatgtaat-aattttttgtgactttgattactttggggtggccacctcataaaattattgttagcttcgcc 27179470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 33036159 - 33036024
Alignment:
Q  216 gtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcggg 315  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||  | |        ||| |||  ||| ||| ||     
T  33036159 gtatatttttatgtttaactacccctgataatatatatttggctaccccaagttcgattttaggtgtaat-aattttttgtgaatttcattagttttgga 33036061  T
Q  316 tggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||||||||||||||| ||||||||||    
T  33036060 tggccacctcataaaattattgctagtttcgccgctg 33036024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 41532412 - 41532478
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  41532412 gtaggtatattattatatttggctacccctaataatatatatttggctaccccatgttcgactttag 41532478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 45810054 - 45810001
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  45810054 gtaggtatatttttatatttagctacccccaataatatatatttggctacccca 45810001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 2410955 - 2411021
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||  || |||||||||||    
T  2410955 ggtatatttttatattaagctacccctaataatatatatttggctactccaaatttgattttagatg 2411021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 38892229 - 38892164
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||  ||||||| ||||||||||||    
T  38892229 gtaggtatatttttatgtttagcta-ccctgataatatatatttgattaccccaagttcgattttag 38892164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 84032 - 83979
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  84032 gtaggtatatttttatatttagctacccctaataatatatatttagttacccca 83979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 36558351 - 36558417
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    ||||||||||||| || |  |||||||||||||||||||||||||||| || ||| |||||||||||    
T  36558351 ggtatatttttatattaaattacccctaataatatatatttggctacctcaagtttgattttagatg 36558417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 48609517 - 48609467
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  48609517 ggtatatttttatatttaactacccctaataatatatatttagctacccca 48609467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 758572 - 758625
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||| |||||| ||||||||||||||| |||||||||    
T  758572 gtaggtatatttttatatttatctacccttaataatatatatttagctacccca 758625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 33336039 - 33335986
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||| ||||| |||||||||||||||||||||||||||  ||||||||    
T  33336039 gtaggtatatatttatatttagctacccctaataatatatatttaactacccca 33335986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 46212091 - 46212038
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||||  |||||||||||||||| |||||||||    
T  46212091 gtaggtatatttttatatttagctacttctaataatatatatttagctacccca 46212038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 5437207 - 5437160
Alignment:
Q  231 tagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  5437207 tagctacccctgataatatatatttggctaccccaagtttgattttag 5437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 303959 - 303922
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||| |||||||||||||||||||||||    
T  303959 gtggccacctcatagaattattgctagcttcgccgctg 303922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 5481251 - 5481288
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5481251 gtggccacctcataaaaatattgctagcttcgccgctg 5481288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 19532406 - 19532357
Alignment:
Q  232 agctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||| |||||||||||||||||||||||||  || |||||||||||    
T  19532406 agctacccttaataatatatatttggctaccccaaatttgattttagatg 19532357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 37205860 - 37205792
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||| ||||||||| || ||||| |||| |||||||||||||||||| |||| ||| |||||||||||    
T  37205860 gtaggtttatttttatattaagctatcccttataatatatatttggcta-cccaagtttgattttagatg 37205792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 39719311 - 39719352
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatat 253  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  39719311 gtaggtatatttttatatttagctatccctaataatatatat 39719352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 41533087 - 41533124
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  41533087 gtggccacctcataaaaatattgctagcttcgccgctg 41533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 2826749 - 2826797
Alignment:
Q  213 taggtatatttttatgtttagctacccctaataatatatatttggctac 261  Q
    ||||||||||||||| |||||||| | |||||||||||||||| |||||    
T  2826749 taggtatatttttatatttagctatctctaataatatatatttagctac 2826797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 2830162 - 2830195
Alignment:
Q  319 ccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||| |||||||||||||||||||||||    
T  2830162 ccacctcatagaattattgctagcttcgccgctg 2830195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 11468622 - 11468667
Alignment:
Q  233 gctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    |||||| ||||||||||||||||||||||| || ||| ||||||||    
T  11468622 gctacctctaataatatatatttggctacctcaagtttgattttag 11468667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 36558810 - 36558847
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  36558810 gtggccacctcatgaaaatattgctagcttcgccgctg 36558847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 38892299 - 38892254
Alignment:
Q  144 gacaggggcgaatgcttgttaaagagaggggtagctatggctaccc 189  Q
    |||||||||||||||||||  || | ||||||||||||||||||||    
T  38892299 gacaggggcgaatgcttgtacaacaaaggggtagctatggctaccc 38892254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 45855378 - 45855439
Alignment:
Q  204 ttgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||| || ||||||| ||||| |||||||||||| ||||||| |||||  |||||||||    
T  45855378 ttgaattggtcggtatatatttatatttagctaccccaaataataaatattgagctacccca 45855439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 23333453 - 23333409
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctacccc 190  Q
    |||||||||||||||||  | |||||||||||||||||| |||||    
T  23333453 caggggcgaatgcttgtacaggagaggggtagctatggccacccc 23333409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 27571750 - 27571706
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctacccc 190  Q
    |||||||||||||||||  || | |||||||||||||||||||||    
T  27571750 caggggcgaatgcttgtacaacaaaggggtagctatggctacccc 27571706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 38892124 - 38892096
Alignment:
Q  319 ccacctcataaaattattgctagcttcgc 347  Q
    |||||||||||||||||||||||||||||    
T  38892124 ccacctcataaaattattgctagcttcgc 38892096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 146 - 346
Target Start/End: Complemental strand, 33538509 - 33538307
Alignment:
Q  146 caggggcgaatgcttgttaaagagaggggtagctatggctaccccnnnnnnnnnn---ttattgaatttgtaggtatatttttatgtttagctaccccta 242  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||| ||||    
T  33538509 caggggcgaaggcttgtacaagagaggggtagctatggctaccccaaaaaaaaaaaaattattgaatttgtaggtatatttttatgtttagctactccta 33538410  T
Q  243 ataatatatatttggctaccccaggttcgattttagatgtggtcannnnnnnatgactttggttactttcgggtggccacctcataaaattattgctagc 342  Q
    ||||||||||||||| |||| |  |||||||||||| |||  | |       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33538409 ataatatatatttggttacctcgagttcgattttaggtgtcat-aattttttatgactttggttactttcgggtgaccacctcataaaattattgctagc 33538311  T
Q  343 ttcg 346  Q
    ||||    
T  33538310 ttcg 33538307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 18606019 - 18606072
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18606019 gtaggtatatttttatatttagctacccctaataatatatatttggctacccca 18606072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 21442008 - 21441939
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||    
T  21442008 gtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttagatg 21441939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 4072642 - 4072573
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||  ||||||||||    
T  4072642 gtaggtatatttttatatttagctacccctaataatatataattagctaccccaagtttaattttagatg 4072573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 41323596 - 41323527
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttagatg 281  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||  ||||||||||    
T  41323596 gtaggtatatttttatatttagctacccctaataatatataattagctaccccaagtttaattttagatg 41323527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 10713855 - 10713918
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||||| || | |||||||| |||||||| |||||||||||||| |||  |||||||    
T  10713855 ggtatatttttatattaaactaccccttataatatacatttggctaccccaagtttaattttag 10713918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 30932216 - 30932153
Alignment:
Q  215 ggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgattttag 278  Q
    ||||||||||||| || ||||  |||||||||||||| |||||||| |||| ||| ||||||||    
T  30932216 ggtatatttttatattaagctgtccctaataatatatgtttggctatcccaagtttgattttag 30932153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 10718584 - 10718621
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    ||||||||||||||||| || |||||||||||||||||    
T  10718584 gtggccacctcataaaaataatgctagcttcgccgctg 10718621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 1233847 - 1233787
Alignment:
Q  205 tgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||| || ||||||| ||||| |||||||||||| ||||||| |||||  |||||||||    
T  1233847 tgaattggttggtatatatttatatttagctaccccaaataataaatattgagctacccca 1233787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 7559176 - 7559100
Alignment:
Q  201 ttattgaatttgtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgatttta 277  Q
    |||||||||  ||||||||||||| || | || ||||| |||| ||||||| ||| ||||||||| ||||| |||||    
T  7559176 ttattgaatgagtaggtatattttcatatataactacctctaaaaatatatctttagctaccccaagttcggtttta 7559100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 46875 - 46928
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46875 gtaggtatatttttatatttagctacccctaataatatatatttggctacccca 46928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 15003 - 15056
Alignment:
Q  212 gtaggtatatttttatgtttagctacccctaataatatatatttggctacccca 265  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  15003 gtaggtatatttttataattagctacccctaataatatatatttagctacccca 15056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 15811 - 15848
Alignment:
Q  315 gtggccacctcataaaattattgctagcttcgccgctg 352  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15811 gtggccacctcatagaattattgctagcttcgccgctg 15848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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