View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_5 (Length: 554)
Name: NF13925_low_5
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 1723397 - 1722844
Alignment:
| Q |
1 |
tcatcaaagagaaaagaaacaaacatatataagagaaagattatggtttttcaaagactttgttgggagaaggagaatcacctttacctaatgcatctcc |
100 |
Q |
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| T |
1723397 |
tcatcaaagagaaaagaaacaaacatatataagagaaagattatggtttttcaaagactttgttgggagaa------tcacctttacctaatgcatctcc |
1723304 |
T |
|
| Q |
101 |
aattgccaatcaattaattaacgtccaaagcttaaaaatggtgcctctagtacccttg--------------aaggagcagtagcatagcattaataaag |
186 |
Q |
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| T |
1723303 |
aattgccaatcaattaattaacgtccaaagcttaaaaatggtgcctctagtacccttggcaagcaacacttaaaggagcagtagcatagcattaataaag |
1723204 |
T |
|
| Q |
187 |
taacaagtacttaaatactcgtttattataatcatatctgttaaaccacccgtcatgtgt--------gattttatcactagatatccgcgggcacgttt |
278 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |
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| T |
1723203 |
taataagtacttaaatactcgtttattataatcatatttgttaaaccacccgtcatgtgtccatgatggattttatcattagatatctgcgggcacgttt |
1723104 |
T |
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| Q |
279 |
cttttttgcgatctctatgcacgccactacaacctttcaatcctgcggtgcacctaaattatcctctagctaggtgggaagcccatcatatcgaactcta |
378 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1723103 |
cttttttgcgatctctatgtacgcctctacaacctttcaatcctgcggtgcacctaaattatcctctagctaggtgggaagcccatcatatcgaactcta |
1723004 |
T |
|
| Q |
379 |
ggacggatcgtgtagtgcgttgccggtcactagcactagtacaacgacaatgaaagctactgggagtagccacttgcctgtgattagtttcatatttgta |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
1723003 |
ggacggatcgtgtagtgcgttgccggtcactagcactagtacaacgacaatgaaagctactgggagtagccactagcctgtgattaatttcatatttgta |
1722904 |
T |
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| Q |
479 |
atctacaggatgttttttgaatgt-aaagctatgatattttagttgagttgattgaggga |
537 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1722903 |
atctacaggatgttttttgaatgtaaaagctatgatattttagttgagttgattgaggga |
1722844 |
T |
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