View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_6 (Length: 544)
Name: NF13925_low_6
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 82 - 526
Target Start/End: Complemental strand, 2018104 - 2017654
Alignment:
| Q |
82 |
attatataatacgaatatgtataaatcatctaaaatcaatgttatcaatcataaatccctttacgctgcactgccatagcgccactataacccgcttttt |
181 |
Q |
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| T |
2018104 |
attatataacacaaatatgtataaatcatctaaaatcaatgttatcaatcacaaatccctttacgctgcactgtcatagcgccactataacc-gcttttt |
2018006 |
T |
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| Q |
182 |
gacaacagtgttactaaatggtggtcttggcaccaccatggcgggcatttgtgaaggaatgcccatcatcgcagtgccatagattgcaatggcgtgtttg |
281 |
Q |
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| T |
2018005 |
gacaacagtgttactaaatggtggtcgtggcaccaccatggcgggcatttgggaaggaatgcccatcatcgcagtgtcataggctgcaatggcgtgtttg |
2017906 |
T |
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| Q |
282 |
tatagatgatttttaaccatcggctatat-------tccgccttagacaacattgaatgacaacactttgtcacaaaactcacatttcatccctaaatta |
374 |
Q |
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| T |
2017905 |
tatagaggatttttaaccatcggctatattctgccatccgccatagacaacattgattgacaacactttgtcacaaaactcacatttcatccctaaatta |
2017806 |
T |
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| Q |
375 |
cgaaattatttgttcatcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacacannnnnnnnnccattcacattccgcga |
474 |
Q |
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| T |
2017805 |
cgaaattatttcttcctcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacactttttttttttcattcacattccgcga |
2017706 |
T |
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| Q |
475 |
aatcaatggttgatgatgatgatctgcctcgacgagattaatatggtgcatg |
526 |
Q |
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| T |
2017705 |
aatcaatggttgatgatgatgatctgccgcgacgcgattaatatggtgcatg |
2017654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 2020527 - 2020460
Alignment:
| Q |
157 |
atagcgccactataacccgctttttgacaacagtgttactaaatggtggtcttggcaccaccatggcgg |
225 |
Q |
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| T |
2020527 |
atagtgccactataacc-gctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcgg |
2020460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 2035590 - 2035535
Alignment:
| Q |
12 |
aaagaacaattcaatcaaagccaattctg-aaagaaacatgaaagggacatatata |
66 |
Q |
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| T |
2035590 |
aaagaacaatccaatcaaagccaattctgaaaagaaacatgaaagggacatatata |
2035535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 2020434 - 2020346
Alignment:
| Q |
228 |
atttgtgaaggaatgcccatcatcgcagtgccatagattgcaatggcgtgtttgtatagatgatttttaaccatcggctatattccgcc |
316 |
Q |
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| T |
2020434 |
atttgtgaaggaatgcctgtcgtcacggtgccataggctgcaatggcttgtttatatagcggatttttaaccatcagctatactccgcc |
2020346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 2020761 - 2020705
Alignment:
| Q |
14 |
agaacaattcaatcaaa-gccaattctgaaa-gaaacatgaaagggacatatatatg |
68 |
Q |
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| T |
2020761 |
agaacaatccaatcaaaagccaattctgaaaagaaacatgaaagggacatatatatg |
2020705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 2020161 - 2020115
Alignment:
| Q |
391 |
tcaaatattaacattttgtatctcaaaatataacaaaaacattctca |
437 |
Q |
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| T |
2020161 |
tcaaatattaacattttttaccccaaaatataacaaaaacattctca |
2020115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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