View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_7 (Length: 512)
Name: NF13925_low_7
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 190 - 512
Target Start/End: Complemental strand, 8869034 - 8868712
Alignment:
| Q |
190 |
ctaccattaatattctagtttgttttccaggaagatgccgagtcaagggatttttaaacttaataattcaaagctttgtgaaagactaaattgtgaatga |
289 |
Q |
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| T |
8869034 |
ctaccattaatattctagtttgttttccaggaagatgctgagtcaagggatttttaaacttaatgattcaaagctttgtcaaagactaaattgtgaatga |
8868935 |
T |
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| Q |
290 |
ccatgatatttagactaatgaaaatcaagttgagtgaagtaatatttaccacaagtttcgctccaaggtccccagaaactctggcaaaagcaaacgcatt |
389 |
Q |
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| T |
8868934 |
ccatgatctttaaactaatgaaaatcaagttgagtgaagtaatatttaccacaagtttcgctccaagttccccagaaactccggcaaaagcaaacgcatt |
8868835 |
T |
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| Q |
390 |
gaagcgtctcagttgaagcgtctaaggagcattgcgtactacctttgcaacgatcttgaaaaatatgacgcaaccatgaaatctcaaatccatattctaa |
489 |
Q |
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| T |
8868834 |
gaagcgtctcagttgaagtgtttaaggagcattgcgtactacctttgcaacgatcttgaaaaatatgacgcaaccacgaaatctcaaatccatattctaa |
8868735 |
T |
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| Q |
490 |
cgccttgcgaataacatcataag |
512 |
Q |
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| T |
8868734 |
cgccttgcgaataacatcataag |
8868712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 8869174 - 8869033
Alignment:
| Q |
18 |
aacttttggtgctgggatcctattgaatga----ttgttgaggaattggaaaggctattttatcatgagtgatgagaattggcctactacttttgttatc |
113 |
Q |
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| T |
8869174 |
aacttttggtgctgggatcctattgaatgaatgattgttgaggaattggaaaggctattttatcatgagtgatgagaattggcttactacttttgttatc |
8869075 |
T |
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| Q |
114 |
actctggactgtctttggatgtccatcattcacggtcgagct |
155 |
Q |
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| T |
8869074 |
actctggactgtctttggatggccatcattcacggtcgagct |
8869033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 495
Target Start/End: Complemental strand, 9100210 - 9100178
Alignment:
| Q |
463 |
ccatgaaatctcaaatccatattctaacgcctt |
495 |
Q |
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| T |
9100210 |
ccatgaaatctcaaatccatatactaacgcctt |
9100178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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