View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_high_12 (Length: 463)
Name: NF13926_high_12
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 21747505 - 21747945
Alignment:
| Q |
10 |
atatgaatggcaaaaggcatttgaaaatctagaaaatgatgacataaacagagaaattttgacaactaaaaatagattaaaatacacgtnnnnnnnn-gt |
108 |
Q |
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| T |
21747505 |
atatgaatggcaaaaggcatttgaaaatctagaaaatgatgacataaacagagaaattttgacatctaaaaatagattaaaatacacgtaaaaaaaaagt |
21747604 |
T |
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| Q |
109 |
caagatctttgtttggatttgataagggatgttgagattgaaaaaagaaagattttccactatatatacgactttgcgttaattacattccaagcaagcc |
208 |
Q |
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| T |
21747605 |
caagatctttgtttggatttgataagggatgttgaaattgaaaaaagaaagattttccactatatatacgactttgcgttaattacattccaagcaagcc |
21747704 |
T |
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| Q |
209 |
aatagcaagtaaccatgtggacaatgggaagcacaagttatatgaaattgacttccaacattgaaaaaagtcctttttgcttgcatagtgttgtcggcat |
308 |
Q |
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| T |
21747705 |
aatagcaaataaccatgtggacaatgggaagcacaagttatacgaaattgacttccaacattgaaaaaagtcctttttgcttccatagtgttgtcggcat |
21747804 |
T |
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| Q |
309 |
tatttgggtgcaatcagctcacaccggacaacaatcctctctcccattctctctttatttccttgtgagaaagtgaaaaaatgcattacactatatggac |
408 |
Q |
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| T |
21747805 |
tatttgggtgcaatcagctcacaccggacaacaatcctctctcccattctctctttatttccttgtgagaaagtgaaaaaatgcattacactatatggac |
21747904 |
T |
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| Q |
409 |
agcaacataacaattgatttattcatgttttagaattttat |
449 |
Q |
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| T |
21747905 |
agcaacataacaattgatttattcatgttttagaattttat |
21747945 |
T |
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