View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_high_2 (Length: 743)
Name: NF13926_high_2
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 461
Target Start/End: Complemental strand, 43316999 - 43316547
Alignment:
| Q |
3 |
taattaatctcaactaattattttttaaaacaatagggaggatcataaccaaagcaataattaggatcaggagtagtaaaatggcaaaacatgtccattt |
102 |
Q |
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| T |
43316999 |
taattaatctcaactaattattttttaaaacaatagggaggattataaccaaagcaataattagga------gtagtaaaatggcaaaacatgtccattc |
43316906 |
T |
|
| Q |
103 |
acgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaatttgctcgcatcatttggctctcaatgtcattcaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43316905 |
acgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaatttgctcgcatcatttggctctcaatgtcattcaac |
43316806 |
T |
|
| Q |
203 |
tcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatttctctctatctctttcactgcaccatgtctctcct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43316805 |
tcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatttctctctatctctttcactgcaccatgtctctcct |
43316706 |
T |
|
| Q |
303 |
caatctcctgtattgtctccatcattcttgctttcccttgctcttggatggctttctgtaaaaatgtttcgctctcacctgatccaccatcatagtatta |
402 |
Q |
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| T |
43316705 |
caatctcctgtattttctccatcattgttgctctcccttgcttttggatggctttctgtaaaaatgtttcgctctcacctgatccaccatcatagtatta |
43316606 |
T |
|
| Q |
403 |
atacaactttccattaagtaaaaatagagaaattacatagaggtaaattcataatatat |
461 |
Q |
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| T |
43316605 |
atacaactttccattaggtaaaaatagagaaattacatagaggtaaattcataatatat |
43316547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 533
Target Start/End: Complemental strand, 43316486 - 43316452
Alignment:
| Q |
499 |
tttaagcattatttattaaaaaattactattcttt |
533 |
Q |
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| T |
43316486 |
tttaagcattatttattaaaaaattactattcttt |
43316452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 83 - 382
Target Start/End: Original strand, 24710060 - 24710359
Alignment:
| Q |
83 |
atggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaatttgctcgcatcattt |
182 |
Q |
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||||||| ||| |||||||| | ||||||| |||| | |||||||||||||| |||||||| || || ||||||||||||||||| || || || | |
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| T |
24710060 |
atggcaatacaagtccattttctggtattcatttggtgcttcctagcaacatgcaattgttggaccccacctctaacatacgaattagcacgtgccacgt |
24710159 |
T |
|
| Q |
183 |
ggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatttctctctatctcttt |
282 |
Q |
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| T |
24710160 |
ggctttcaatattatccaattgttcaccttgtgattgaaccaaaacagacatgtccataaacacttggtgaagctccattagatttctttctatctcttt |
24710259 |
T |
|
| Q |
283 |
cactgcaccatgtctctcctcaatctcctgtattgtctccatcattcttgctttcccttgctcttggatggctttctgtaaaaatgtttcgctctcacct |
382 |
Q |
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| T |
24710260 |
cactgtgtcatgcctctcttgaatttcttggattgtgtccatgatgtttgctcttccttgttgctggattgctttttgtaaaaatgtttcactttcacct |
24710359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 10228289 - 10228327
Alignment:
| Q |
469 |
ggtcttgttaacgagtgttccaaggtactctttaagcat |
507 |
Q |
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| T |
10228289 |
ggtcttgttaacgagtgtccctaggtactctttaagcat |
10228327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 507
Target Start/End: Complemental strand, 565833 - 565792
Alignment:
| Q |
466 |
aagggtcttgttaacgagtgttccaaggtactctttaagcat |
507 |
Q |
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| T |
565833 |
aagggtcttgttaacgagtgtcccgagatactctttaagcat |
565792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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