View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_high_28 (Length: 357)
Name: NF13926_high_28
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 39783977 - 39783654
Alignment:
| Q |
20 |
ataaataaaataaagatatttgttaaattgaccggacatgtaaacccttgtcaccttcccacatttttaaagggttaagcggagtggactatcttgagtc |
119 |
Q |
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| T |
39783977 |
ataaataaaacaaagatatttgttaaattgacaggacatgtaaacccttgtcaccttcccacatttttaaagggttaagcggagtggacaatcttgagtc |
39783878 |
T |
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| Q |
120 |
gtaatgttcgaaacctcaacttactctagccaaattaacggatcaatgggttagcctgtcgatctttttatcaaagtttcctccttcatcaaaatataaa |
219 |
Q |
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| T |
39783877 |
gtaatgttcaaaacctcaacttactctagccaaattaacggatcaatgggttagcctgtcgatctttttatcaaagtttcctccttcatcaaaatataaa |
39783778 |
T |
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| Q |
220 |
atgcttaaacctactttctactcttaattcaaccaaacaacaattttaatttttccattttaaaatatagaatttagtccttcaaattcacaagtttcgg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783777 |
atgcttaaacctactttctactcttaattcaaccaaacaacaattttaatttttccattttaaaatatagaatttagtccttcaaattcacaagtttcgg |
39783678 |
T |
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| Q |
320 |
gatttttccctacaacctagtttg |
343 |
Q |
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|||||||||| ||||||||||||| |
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| T |
39783677 |
gatttttccccacaacctagtttg |
39783654 |
T |
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