View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13926_high_37 (Length: 329)
Name: NF13926_high_37
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_high_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 7882774 - 7882465
Alignment:
| Q |
1 |
aaagcattcaaaactttcttgttgtatatgttgaaaacaacattcaaagcccaccaagtagcaaaatacaatccaatcttaagcttttgagctgcttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7882774 |
aaagcattcaaaactttcttgttgtatatgttgaaaacaacattcaaagcccaccaagtagcaaaatacaatccaatcttaagcttttgagctgcttctt |
7882675 |
T |
|
| Q |
101 |
cactaggaagttcaatgttaatctctagtggtcttgatctatcagcctcataggcttgacattctgtcacattctttcttttgggttttgttagcaatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7882674 |
cactaggaagttcaatgttaatctctagtggtcttgatctatcagcctcataggcttgacattctgtcacattctttcttttgggttttgttagcaatgc |
7882575 |
T |
|
| Q |
201 |
aaaattttgagtggatgaaaggtagagaggtttcttggaagagagtaaatggagactcatgttttgttcaacattttgaatggttggtagaattgaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7882574 |
aaaattttgagtggatgaaaggtagagaggtttcttggaagagagtaaagggagactcatgttttgttcaacattttgaatggttggtagaattgaaaat |
7882475 |
T |
|
| Q |
301 |
tgagaccttg |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
7882474 |
tgagaccttg |
7882465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 54984879 - 54984783
Alignment:
| Q |
1 |
aaagcattcaaaactttcttgttgtatatgttgaaaacaacattcaaagcccaccaagtagcaaaatacaatccaatcttaagcttttgagctgctt |
97 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
54984879 |
aaagcattcaaaaccttcttgttgtaaatattgaaaaccacattcaaagcccaccatgttgcaaaatacaaaccaattttgagtttttgagctgctt |
54984783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 18395179 - 18395113
Alignment:
| Q |
2 |
aagcattcaaaactttcttgttgtatatgttgaaaacaacattcaaagcccaccaagtagcaaaata |
68 |
Q |
| |
|
||||||||||||| ||||||||||| || || || ||||||||||||||||||||||| |||||||| |
|
|
| T |
18395179 |
aagcattcaaaaccttcttgttgtaaatattaaacacaacattcaaagcccaccaagttgcaaaata |
18395113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University