View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_high_39 (Length: 314)
Name: NF13926_high_39
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 43169490 - 43169775
Alignment:
| Q |
18 |
caagtgggtgttaatttgaataccaacaagtggtttgtctagtggtgatggatagtgatctcttaaataagagttttatatatttttactaaacttaaat |
117 |
Q |
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| T |
43169490 |
caagtgggtgttaatttgaataccaacaagtggtttgtctagtggtgatggatagtgatctcttaaataagagttttatatatttttact-aacttaaat |
43169588 |
T |
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| Q |
118 |
tacattgttttttcaatgtaattaaataatagtgtttgaatcataactctatatatgnnnnnnntgtggttgacaaagtcatatatatattcctttcatt |
217 |
Q |
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| T |
43169589 |
tacattgttttttcaatgtaattaaataagagtgtttgaatcataactctatatatgaaaaaaatgtggttgacaaagtcatatatatattcctttcatt |
43169688 |
T |
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| Q |
218 |
acaatattcatgt-nnnnnnnnngagtgtttgaatgagatttaaatacacattaagaaaccatatgtcccggtatcactttgatgat |
303 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
43169689 |
acaatattcatgtaaaaaaaaatgagtgtttgaatgagatttaaatacacattaagaaaccatatattccggtatcactttgatgat |
43169775 |
T |
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