View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13926_high_49 (Length: 251)
Name: NF13926_high_49
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_high_49 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34244156 - 34244400
Alignment:
| Q |
1 |
cgtgtacagatacaggtaatgtggtacataataccaaattttggtataggtacgttgatataaatatcaaaaagttgatttttcaattgaattactattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34244156 |
cgtgtacagatacaggtaatgtggtacataataccaaattttggtataggtacgttgatataaatatcaaaaagttgatttttcaattgaattactattg |
34244255 |
T |
|
| Q |
101 |
ttgttgtaaaaacatgcttagaaaaaatatcaattnnnnnnnnnnnnnnnnnnnnnnnctagtcatattttgatcacgtgtttaacagcacttatatcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34244256 |
ttgttgtaaaaacatgcttagaaaaaatatcaattataataaaataataataataatactagtcatattttgatcacgtgtttaacagcacttatatcat |
34244355 |
T |
|
| Q |
201 |
tatgttgctttagagttttacnnnnnnngtgcactccctttgcta |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34244356 |
tatgttgctttagagttttactttttttgtgcactccctttgcta |
34244400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 9448023 - 9448064
Alignment:
| Q |
86 |
attgaattactattgttgttgtaaaaacatgcttagaaaaaa |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
9448023 |
attgaattactattattgttgtaaaaacatgcttacaaaaaa |
9448064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 10355976 - 10355946
Alignment:
| Q |
97 |
attgttgttgtaaaaacatgcttagaaaaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10355976 |
attgttgttgtaaaaacatgcttagaaaaaa |
10355946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 2044456 - 2044486
Alignment:
| Q |
97 |
attgttgttgtaaaaacatgcttagaaaaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2044456 |
attgttgttgtaaaaacatgcttagaaaaaa |
2044486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University