View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_high_55 (Length: 230)

Name: NF13926_high_55
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_high_55
NF13926_high_55
[»] chr3 (14 HSPs)
chr3 (15-211)||(6265556-6265752)
chr3 (15-207)||(6259065-6259260)
chr3 (17-139)||(6245224-6245346)
chr3 (15-211)||(6882369-6882565)
chr3 (15-149)||(6142213-6142347)
chr3 (17-139)||(6168828-6168950)
chr3 (20-132)||(13270529-13270641)
chr3 (39-144)||(6900020-6900125)
chr3 (15-125)||(6591324-6591434)
chr3 (15-137)||(7749938-7750060)
chr3 (32-121)||(7587802-7587891)
chr3 (33-125)||(8568959-8569051)
chr3 (15-137)||(5267970-5268092)
chr3 (15-121)||(5298661-5298767)
[»] chr1 (1 HSPs)
chr1 (46-150)||(35140368-35140472)
[»] chr7 (1 HSPs)
chr7 (32-125)||(6573308-6573401)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 6265752 - 6265556
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  6265752 aagaaaatagtagcaaaatgtggggggttgcctttaactctgaaaacattggggattctcttccaaagaaaattctctgtaactgaatgggttgagatat 6265653  T
Q  115 tggagactgattcgtggcgtttacccgaggatgacaactacattaattttgctgtgagtgtgtgttaccttagcttccctcccaatctgaagcgttg 211  Q
    |||||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||||  ||  |||||||||| ||||||||||||||||||||||    
T  6265652 tggagactgatttgtggtgtttacccgagggtgacaactgcattaattttgctctgaggatgcattaccttagcctccctcccaatctgaagcgttg 6265556  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 6259260 - 6259065
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    ||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||  |||||||||||||| ||||||| || |||||||||| ||||||    
T  6259260 aagaaaatagtagaaaaatgtggggggttgccttcagctctgaaaacattggggattctcttgcaaagaaagttctctgaaaatgaatgggttaagatat 6259161  T
Q  115 tggagactgattcgtggcgtttacccgaggatgacaa---ctacattaattttgctgtgagtgtgtgttaccttagcttccctcccaatctgaagc 207  Q
    |||||||||||| ||||||||||||| ||| ||||||   | ||||| |||  ||| ||||  || ||||||||||| ||||| ||||||||||||    
T  6259160 tggagactgatttgtggcgtttacccaagggtgacaacagcaacatttattccgctttgagaatgagttaccttagcctcccttccaatctgaagc 6259065  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 6245346 - 6245224
Alignment:
Q  17 gaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattg 116  Q
    ||||||||||| || ||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||||||| || |||||||||| |||||||     
T  6245346 gaaaatagtagaaaaatgtggggggtcgcctttagctctgaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaagatatta 6245247  T
Q  117 gagactgattcgtggcgtttacc 139  Q
    |||||||||| ||||||||||||    
T  6245246 gagactgatttgtggcgtttacc 6245224  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 6882565 - 6882369
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    ||||||||||||| ||  |||||||||| ||||||||| ||||||| ||||||||| ||||||| || ||||||||||| | |||||||| || || |||    
T  6882565 aagaaaatagtagaaaagtgtggggggttgcctttagcactgaaaacattggggaatctcttgctaaaaaaattctctgaatctgaatggattaaggtat 6882466  T
Q  115 tggagactgattcgtggcgtttacccgaggatgacaactacattaattttgctgtgagtgtgtgttaccttagcttccctcccaatctgaagcgttg 211  Q
    |||||||||||| ||||||||||||||||| ||| | ||||||||| ||     ||||  || ||||||||| | ||||| ||||||||||||||||    
T  6882465 tggagactgatttgtggcgtttacccgagggtgaaatctacattaacttgttactgagattgagttaccttatcctcccttccaatctgaagcgttg 6882369  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 6142347 - 6142213
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    ||||||||||||| ||  |||||||||| ||| ||||||||||||| ||||||||  |||||| | ||||||||||||| || ||||||||||  |||||    
T  6142347 aagaaaatagtagaaaagtgtggggggttgccattagctctgaaaacattggggattctcttgaatagaaaattctctgaaattgaatgggttaggatat 6142248  T
Q  115 tggagactgattcgtggcgtttacccgaggatgac 149  Q
    |||||||||||| |||||||||||| |||| ||||    
T  6142247 tggagactgatttgtggcgtttaccagagggtgac 6142213  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 6168950 - 6168828
Alignment:
Q  17 gaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattg 116  Q
    ||||||||||| || |||||||||||||||||| ||||| |||| ||||||||  ||||||||||||| |||||||| || |||||||||| |||||||     
T  6168950 gaaaatagtagaaaaatgtggggggtcgccttttgctctaaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaagatatta 6168851  T
Q  117 gagactgattcgtggcgtttacc 139  Q
    |||||||||| |||| |||||||    
T  6168850 gagactgatttgtggagtttacc 6168828  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 13270529 - 13270641
Alignment:
Q  20 aatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggag 119  Q
    |||||||| || ||||||||| | ||||||||||||||||| ||||||||  |||||||||||||||||||||| || | |||||||| |||||||||||    
T  13270529 aatagtagaaaaatgtgggggtttgcctttagctctgaaaacattggggattctcttgcaaagaaaattctctgaaattaaatgggttaagatattggag 13270628  T
Q  120 actgattcgtggc 132  Q
    ||||||| |||||    
T  13270629 actgatttgtggc 13270641  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 6900125 - 6900020
Alignment:
Q  39 gggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgattcgtggcgtttac 138  Q
    |||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||||| | |||| |||||| |||| |||||||||||||  ||||||||||    
T  6900125 gggttgcctttagctctgaaaacattggggaatctcttggaaagaaagttctctgaacctgattgggttaagatgttggagactgatttctggcgtttac 6900026  T
Q  139 ccgagg 144  Q
    | ||||    
T  6900025 cagagg 6900020  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 6591324 - 6591434
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    ||||||||||||| ||  |||||||||   ||||||||||| |||| | ||||| |||| ||||||| ||||||||||||||| |||||| |  ||||||    
T  6591324 aagaaaatagtagaaaagtgtggggggattcctttagctctaaaaacaatggggcaacttttgcaaaaaaaattctctgtaaccgaatggatgaagatat 6591423  T
Q  115 tggagactgat 125  Q
    |||||||||||    
T  6591424 tggagactgat 6591434  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 7750060 - 7749938
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    ||||||||||||| ||  |||||||||| ||||||||||||  ||| ||||||| || | |||||||  ||||||| || |||||||||| || | ||||    
T  7750060 aagaaaatagtagaaaagtgtggggggttgcctttagctctagaaacattggggcaattattgcaaaacaaattctgtgaaactgaatggattaaaatat 7749961  T
Q  115 tggagactgattcgtggcgttta 137  Q
    |||||||||||  ||||||||||    
T  7749960 tggagactgatatgtggcgttta 7749938  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 7587891 - 7587802
Alignment:
Q  32 atgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagac 121  Q
    |||||| |||| |||| ||||| |||||| ||||||||||||| ||||||||||||| |||  | |||||||| || |||||||||||||    
T  7587891 atgtggagggttgcctctagctgtgaaaacattggggaaactcctgcaaagaaaattttctcaagctgaatggtttaagatattggagac 7587802  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 8568959 - 8569051
Alignment:
Q  33 tgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgat 125  Q
    ||||| |||| |||||||||| |||||| ||||||||| ||||||||||||||||| |||  |  |||||||  | | |||||||||||||||    
T  8568959 tgtggagggttgcctttagctgtgaaaacattggggaatctcttgcaaagaaaattttctcaaggtgaatggtctaacatattggagactgat 8569051  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 5268092 - 5267970
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    |||||||||||||  |  ||||| ||||  ||||||||| | ||||  ||||| || ||||||| |||||||||||||  |  |||||||||| ||||||    
T  5268092 aagaaaatagtagataagtgtggagggttacctttagctgtaaaaactttgggaaatctcttgcgaagaaaattctctcaacatgaatgggttaagatat 5267993  T
Q  115 tggagactgattcgtggcgttta 137  Q
    ||||||| |||  ||||||||||    
T  5267992 tggagacagatatgtggcgttta 5267970  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 5298767 - 5298661
Alignment:
Q  15 aagaaaatagtagcaagatgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatat 114  Q
    |||||||| |||| ||  ||||| |||| |||| ||||| | |||  ||||||||| ||||||| |||||||||||||  |  |||||||||| ||||||    
T  5298767 aagaaaatcgtagaaaagtgtggagggttgcctctagctgtaaaagcattggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaagatat 5298668  T
Q  115 tggagac 121  Q
    |||||||    
T  5298667 tggagac 5298661  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 35140368 - 35140472
Alignment:
Q  46 ctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgattcgtggcgtttacccgagga 145  Q
    ||||||||||||||| | ||||||  |||||||||||||||||||| | || |||||||||| |||||||||||||||||| | ||||||||||| |||     
T  35140368 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 35140467  T
Q  146 tgaca 150  Q
    |||||    
T  35140468 tgaca 35140472  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 6573308 - 6573401
Alignment:
Q  32 atgtggggggtcgcctttagctctgaaaaaattggggaaactcttgcaaagaaaattctctgtaactgaatgggttgagatattggagactgat 125  Q
    |||||| |||| |||||||||  |||||| ||||||||| ||||||||||||||||| |||     ||||||| || |||||||||| ||||||    
T  6573308 atgtggagggttgcctttagccgtgaaaacattggggaatctcttgcaaagaaaattttctcagggtgaatggtttaagatattggaaactgat 6573401  T

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