View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_10 (Length: 498)
Name: NF13926_low_10
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 24568486 - 24568008
Alignment:
| Q |
18 |
attagagcagttttaaaggtaccacatgtgactcatcatagaaggtgcaggtatcaaataattgatacatatgatgatgagagaacaaaatcataggggc |
117 |
Q |
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| T |
24568486 |
attagagcagttttaaaggtaccacatgtgtctcatcatagaaggtgcaggtatcaaataattgatacatatgatgatgagagaacaaaatcataggggc |
24568387 |
T |
|
| Q |
118 |
taaagcatattctaactttgaatatcgcaaacttttgcacaatttggaattataatataattgcagataccagatagaatatgtgaaggacggtttgcac |
217 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24568386 |
taaagcatattctacctttgaatattgcaaacttttgcacaatttggaattataatataattgcagataccagatagaatatgtgaaggacggtttgcac |
24568287 |
T |
|
| Q |
218 |
tcattagaaggccttaattgttcgatattggtgtcttccctttcacacggttgtggtcccttatttgttgggcatgatcatatattacatgttcattcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24568286 |
tcattagaaggccttaattgttcgatattggtgtcttctctttcacacggttgtggtcccttatttgttgggcatgatcatatattacatgttcattcat |
24568187 |
T |
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| Q |
318 |
atgtacatccccatgcacattatacattactgcaacacgtg-nnnnnnnntaaaacttgtgcagttattgtgcattcaattgccttaaatttatgnnnnn |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24568186 |
atgtacatccccatgcacattatacattactgcaacacgtgcaaaaaaaataaaacttgtgcagttattgtgcattcaattaccttaaatttatg--ttt |
24568089 |
T |
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| Q |
417 |
nnnnnngtgtgaatttgttgtagaatattctgcaaaatggttcccttttgtgtaacatatttattatcctatgctactact |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
24568088 |
ttttttgtgtgaatttgttgtagaatattctgcaaaatggttcccttttgtgcaacatatttattatcctatactactact |
24568008 |
T |
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