View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_11 (Length: 486)
Name: NF13926_low_11
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 49 - 477
Target Start/End: Complemental strand, 34691703 - 34691275
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691703 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
34691604 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcctatacaagttcagaaagaaag |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34691603 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcattgtatacaagttcagaaagaaag |
34691504 |
T |
|
| Q |
249 |
ccataaaaacccagaacatcagatgaaatcaagaaagagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttcaaataccctaatttt |
348 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34691503 |
ccataaaaacccagaacatcaggtgaaatcaagaaagagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttgaaataccctaatttt |
34691404 |
T |
|
| Q |
349 |
actaaaatgtaagaatttgagtaagtatttcactctatttaaaaacttattgtcgatataggaggagatgtaattttgaggacatgaatctactctatat |
448 |
Q |
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|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691403 |
actaaaatgtatgaatttgagtaagtatttcaatctatttaaaaacttattgtcgatataggaggagatgtaattttgaggacatgaatctactctatat |
34691304 |
T |
|
| Q |
449 |
ataacttatgatgttctatgtgatgatgt |
477 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
34691303 |
ataacttatgatgttctatgtgatgatgt |
34691275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 49 - 477
Target Start/End: Complemental strand, 26989628 - 26989200
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26989628 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
26989529 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcctatacaagttcagaaagaaag |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26989528 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcattgtatacaagttcagaaagaaag |
26989429 |
T |
|
| Q |
249 |
ccataaaaacccagaacatcagatgaaatcaagaaagagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttcaaataccctaatttt |
348 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26989428 |
ccataaaaacccagaacatcaggtgaaatcaagaaagagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttgaaataccctaatttt |
26989329 |
T |
|
| Q |
349 |
actaaaatgtaagaatttgagtaagtatttcactctatttaaaaacttattgtcgatataggaggagatgtaattttgaggacatgaatctactctatat |
448 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26989328 |
actaaaatgtatgaatttgagtaagtatttcaatctatttaaaaacttattgtcgatataggaggagatgtaattttgaggatatgaatctactctatat |
26989229 |
T |
|
| Q |
449 |
ataacttatgatgttctatgtgatgatgt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26989228 |
ataacttatgatgttctatgtgatgatgt |
26989200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 49 - 477
Target Start/End: Original strand, 27075672 - 27076075
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27075672 |
gatcaagcagcctagccatctctaatgaatattgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttgtttaagaaatgtgcggac |
27075771 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcctatacaagttcagaaagaaag |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
27075772 |
aaagggcctcaacttggtcattacttgcatatgcgccaacatgaagaggctacctttagagatatctattgtttcatcatataca--------------- |
27075856 |
T |
|
| Q |
249 |
ccataaaaacccagaacatc--agatgaaatcaagaaagagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttcaaataccctaatt |
346 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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|
| T |
27075857 |
-------aacccagaacatcaaaggtgacatcaagaaagagtagtaagaaaatgcactcatgatgatgaagcatataaatgagtttgaaataccttaatt |
27075949 |
T |
|
| Q |
347 |
ttactaaaatgtaagaatttgagtaagtatttcactctatttaaaaacttattgtcgatataggaggagatgtaattttgaggacatgaatctactctat |
446 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| | |||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
27075950 |
ttactaaaatgtaagaatttgagtaagcatgtcaatatatttaaaaaattattgttgatatagaaggagatgtaattttgaggacatgaa-----tctat |
27076044 |
T |
|
| Q |
447 |
atataacttatgatgttctatgtgatgatgt |
477 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
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| T |
27076045 |
atatgacttatgatgttctatgtgatgatgt |
27076075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 49 - 244
Target Start/End: Complemental strand, 27028447 - 27028252
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27028447 |
gatcaagcagcttggccatctctaacgagtaccgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
27028348 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcctatacaagttcagaaag |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27028347 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcatatacaagttcagaaag |
27028252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 231
Target Start/End: Complemental strand, 21433627 - 21433445
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
21433627 |
gatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggac |
21433528 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctattgtttcatcctata |
231 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||| | |||||| |||||| | | |||||||||||||||||| |||| |
|
|
| T |
21433527 |
aaagggcctcaacttggccattctttgcctatgctccaatacgaagagtctacctctggcgatatctattgtttcatcatata |
21433445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 27152597 - 27152476
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
27152597 |
gatcaagcagcttggccatctctagtgaatactgccgaatacccatggtgtagatgtacatttcaaacacttcacttgcttctttaagaaatgtacggac |
27152498 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcatt |
170 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
27152497 |
gaagggcctcaacttgttcatt |
27152476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 408 - 477
Target Start/End: Complemental strand, 27152155 - 27152086
Alignment:
| Q |
408 |
aggaggagatgtaattttgaggacatgaatctactctatatataacttatgatgttctatgtgatgatgt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27152155 |
aggaggagatgtaattttgaggacatgaatctactctatatataacttatgatgttctatgtgatgatgt |
27152086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 50172904 - 50173072
Alignment:
| Q |
49 |
gatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatgtgcggac |
148 |
Q |
| |
|
||||||||||| |||||||||| |||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
50172904 |
gatcaagcagcttggccatctccaatgcatagggcctatcacccatggtgtagatgtacatctcaaacatttcacttgcttctttaagaaatgtacggac |
50173003 |
T |
|
| Q |
149 |
aaagggcctcaacttggtcattacttgcacatgctccaacatgaagaggctacctttagagatatctat |
217 |
Q |
| |
|
||||||||||||||| ||||| | |||| |||||||| |||||||||| ||||| |||| |||||| |
|
|
| T |
50173004 |
aaagggcctcaactttgtcatcatgtgcatatgctccagtttgaagaggctgcctttggagacatctat |
50173072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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