View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_12 (Length: 483)
Name: NF13926_low_12
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 9896813 - 9897270
Alignment:
| Q |
11 |
caaaggatccactgggagaaagccgtaactagccgcggctttcacaataaacaatccaataacaggtagcaggaaaagccgggttatgatgatgcagatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9896813 |
caaaggatccactgggagaaagccgtaactagccgcggctttcacaataaacaatccaataacaggtagcaggaaaagccgggttatgatgatgcagatg |
9896912 |
T |
|
| Q |
111 |
agtgtcaatggttttacacttgatgatttcaagcctgccgtgaggttaccaccaagcaaaagcgtgatgcaaggaattgttccgttcctgcaaagaatta |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9896913 |
agtgtcaatggttttacacttgatgatttcaagcctgccgtgaggttaccaccaagcaaaagcgtgatgcaaggaattgttccgttcctgcaaagaatta |
9897012 |
T |
|
| Q |
211 |
agtttaaacacataattgtgtggttagaaaagaagtagagactttacggactatttgatttttatgaagaaattaaggcagatacccaagtaattcaaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9897013 |
agtttaaacacataattgtgtggttaaaaaagaagtagagactttacggactatttgatttttatgaagaaattaaggcagatacccaagtaattcaaga |
9897112 |
T |
|
| Q |
311 |
gtgctttggattactctaaatggagcattgtctccaattattaagttccttaaccatgcaaccgctccaaagaggaaaccgaaaaactgatcatggaata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9897113 |
gtgctttggattactctaaatggagcattgtctccaattattaacttccttaaccatgcaaccgctccaaagaggaaaccgaaaaactgatcatggaata |
9897212 |
T |
|
| Q |
411 |
agtaaatattaaatttgaaacaaatgtaacaaagcagagaagaaagcaagcaagaaag |
468 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9897213 |
agtaaatgttaaatttgaaacaaatgtaacaaagcagagaagaaagcaagcaagaaag |
9897270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 9871180 - 9871635
Alignment:
| Q |
11 |
caaaggatccactgggagaaagccgtaactagccgcggctttcacaataaacaatccaataacaggtagcaggaaaagccgggttatgatgatgcagatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| || | ||||||||| |||||||||||||||||| |
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|
| T |
9871180 |
caaaggatccactgggagaaagccgtaattagccgcagctttcacaataaataatccaataacaggcagtacgaaaagccgagttatgatgatgcagatg |
9871279 |
T |
|
| Q |
111 |
agtgtcaatggttttacacttgatgatttcaagcctgccgtgaggttaccaccaagcaaaagcgtgatgcaaggaattgttccgttcctgcaaagaatta |
210 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |
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| T |
9871280 |
agagtcaatggttttacacttgatgatttcaagcctgcagtgaggttaccaccaagcaaaagtgtgatgcaaggaattgttccatttctgcaaagaatta |
9871379 |
T |
|
| Q |
211 |
agtttaaacacataattgtgtggttagaaaagaagtagagactttacggactatttgatttttatgaagaaattaaggcagatacccaagtaattcaaga |
310 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
9871380 |
agtttaaacaaataattatgtggttagaaaagaagtagagacttt--ggattatttggtttttatgaataaattaaggcacatacccaagtaattcaaga |
9871477 |
T |
|
| Q |
311 |
gtgctttggattactctaaatggagcattgtctccaattattaagttccttaaccatgcaaccgctccaaagaggaaaccgaaaaactgatcatggaata |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |
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|
| T |
9871478 |
gtgctttggattactctaaatggagcattgtctccaattatcaagttccttaaccatgcaaccgcaccaaagaggaaaccgaaaaactgattatggattt |
9871577 |
T |
|
| Q |
411 |
agtaaatattaaatttgaaacaaatgtaacaaagcagagaagaaagcaagcaagaaag |
468 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
9871578 |
tgtaattgttaaatttgaaacaaatgtaacaaagcagagaagaaatgaatcaagaaag |
9871635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 9865256 - 9864862
Alignment:
| Q |
11 |
caaaggatccactgggagaaagccgtaactagccgcggctttcacaataaacaatccaataacaggtagcaggaaaagccgggttatgatgatgcagatg |
110 |
Q |
| |
|
|||||||||||||||||||| |||| | | || ||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||| |
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|
| T |
9865256 |
caaaggatccactgggagaatgccgaagttcgctgcggctttcacaataaacaatccaataacaggtagtacaaaaagccgagttataatgatgctgatc |
9865157 |
T |
|
| Q |
111 |
agtgtcaatggttttacacttgatgatttcaagcctgccgtgaggttaccaccaagcaaaagcgtgatgcaaggaattgttccgttcctgcaaagaatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||| ||||| ||| |
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|
| T |
9865156 |
agtgtcaatggttttacacttgatgatttcaagcctgcagtgagtttaccaccaagcaaaagggtgatgcagggaattgttccattcctgaaaagagtta |
9865057 |
T |
|
| Q |
211 |
agtttaaacacataattg-tgtggttagaaaagaagtagagactttacggactatttgatttttatgaagaaattaaggcagatacccaagtaattcaag |
309 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||| ||||||| |||||| |||||||||| |||||||| | | |||||| |||||| ||||||||||| |
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|
| T |
9865056 |
agtttaaacaaataattgttttggttagaaaaaaagtagacactttaaggactatttggtttttatg----attgaaggcacataccctagtaattcaag |
9864961 |
T |
|
| Q |
310 |
agtgctttggattactctaaatggagcattgtctccaattattaagttccttaaccatgcaaccgctccaaagaggaaaccgaaaaactgatcatggaa |
408 |
Q |
| |
|
|||| |||||| || || |||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||| ||| |||| |
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|
| T |
9864960 |
agtgtcttggataacactgaatggagcattgtcaccaattattaggttccttaaccatgcaaccgcgccgaagaggaaaccgaaaaactgctcaaggaa |
9864862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 9907066 - 9907461
Alignment:
| Q |
11 |
caaaggatccactgggagaaagccgtaactagccgcggctttcacaataaacaatccaataacaggtagcaggaaaagccgggttatgatgatgcagatg |
110 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||| |
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|
| T |
9907066 |
caaaggatccactgggagaatgccgaaactcgccacggctttcacaataaacaatccaataacaggtagtacgaaaagcctagttataatgatgctgatc |
9907165 |
T |
|
| Q |
111 |
agtgtcaatggttttacacttgatgatttcaagcctgccgtgaggttaccaccaagcaaaagcgtgatgcaaggaattgttccgttcctgcaaagaatta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||| ||||| || |
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|
| T |
9907166 |
agtgtcaatggttttacacttgatgatttcaaccctgcagtgaggttaccacctagtaaaagggtgatgcagggaattgttccattcctggaaagagttg |
9907265 |
T |
|
| Q |
211 |
agtttaaacacataattgtgtggttagaaaagaagtagagactttacggactatttgatttttatgaagaaattaaggcagatacccaagtaattcaaga |
310 |
Q |
| |
|
|||||||||| ||| | | ||||||||||| ||||||| |||||| ||||||||| | |||| | | | |||| | ||||||||||||||||||| |
|
|
| T |
9907266 |
agtttaaacaaatattgttttggttagaaaaaaagtagacactttaaggactattttgtatttaag----attgaaggtacatacccaagtaattcaaga |
9907361 |
T |
|
| Q |
311 |
gtgctttggattactctaaatggagcattgtctccaattattaagttccttaaccatgcaaccgctccaaagaggaaaccgaaaaactgatcatggaata |
410 |
Q |
| |
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||| |||||| || ||||||||||||||||| || ||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
9907362 |
gtgtcttggataacactaaatggagcattgtcaccgattattaggtttcttaaccatgcaaccgcgccgaagaggaaaccgaaaaactgatcatggaata |
9907461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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