View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_13 (Length: 470)
Name: NF13926_low_13
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 47257702 - 47257444
Alignment:
| Q |
20 |
gaggatcaaacttgaactgcataatctttgaactttgtttgaaatttacctctctaatattttgcccttcttgagtggaaatagtggaggcaaagcactg |
119 |
Q |
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| T |
47257702 |
gaggatcaaacttgaactgcataatctttgaactttgtttgaaatttacctctctaatattttgcccttcttgagtggaaatagtggaggcaaagcactg |
47257603 |
T |
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| Q |
120 |
tttttcatctgtgtacaaattggcacattaatcattggtctaattctaatagtagctgatcttgttctctccaaccctttctttatcctcttcacatgct |
219 |
Q |
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| T |
47257602 |
tttttcatctgtgtacaaattggcacattaatcattggtctaattctaatagtagctgatcttgttctctccaaccctttctttatcctcttcacatgct |
47257503 |
T |
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| Q |
220 |
gattctctttgtttttagaaccttctttagcagctacatcgccgagcgaactcccattc |
278 |
Q |
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| T |
47257502 |
gattctctttgtttttagaaccttctttagcagctacatcaccgagcgaactcccattc |
47257444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 322 - 469
Target Start/End: Complemental strand, 47257400 - 47257253
Alignment:
| Q |
322 |
ctctttgtttcttcaaccttagtaactctttccataaaacagtgcactttggtggccttggtgatggatcatcatccacaaaccaatttactctactatt |
421 |
Q |
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| T |
47257400 |
ctctttgtttcttcaaccttagtaactctttccataaaacagtgcactttggtggccttggtgatggatcatcatccacaaaccaatttactctactatt |
47257301 |
T |
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| Q |
422 |
attattatcttctttgttgtccactaccacctcaatcacttcctcctc |
469 |
Q |
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| T |
47257300 |
attattatcttctttgttgtccactaccacctcaatcacttcctcctc |
47257253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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