View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13926_low_14 (Length: 464)
Name: NF13926_low_14
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 44883239 - 44882812
Alignment:
| Q |
20 |
atcgacacaaccatacaacatggctttacaatccaatttatctgacacaaatgtcgtagcttcaactatgccactaataccacaaagtgttgtacctgag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44883239 |
atcgacacaaccatacaacatggctttacaatccaatttatctgacacaaatgtcgtagcttcaactatgccactaataccacaaagtgttgtacctgag |
44883140 |
T |
|
| Q |
120 |
gtgaatccaagtgtttataaaactcctatggcatcaaatccatcttttattcaagttcgttctaatcaatatcagcagcaatacgtgagtttatctcaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44883139 |
gtgaatccaagtgtttataaaactcctatggcatcaaatccatcttttattcaagttctttctaatcaatatcagcagcaatacgtgagtttatctcaaa |
44883040 |
T |
|
| Q |
220 |
atattcatcatccaccacagaagactatttatggttatgaatatggtggaggcggagctacgcaagaacaagtatactacacacaacagcagcctgcaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44883039 |
atattcatcatccaccacagaagactatttatggttatgaatatggtggaggtggagctacgcaagaacaagtatactacacacaacagcagcccgcaaa |
44882940 |
T |
|
| Q |
320 |
tgcaaatgcacctcctcagtaccaatccatgaccccagcacctgctgcagcagcactattagatgtttcaaaacaatttcctatagacaacaacatccag |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44882939 |
tgcaaatgcacctcctcagtaccaatccatgaccccagcacctgctgtagcagcactattagatgtttcaaaacaatttcctatagacaacaacatccag |
44882840 |
T |
|
| Q |
420 |
cagcaaaacagaacttcacagcgagtat |
447 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
44882839 |
cagcaaaacagaacttcacagcaagtat |
44882812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 353
Target Start/End: Original strand, 9019638 - 9019764
Alignment:
| Q |
215 |
tcaaaatattcatcatccaccacagaagactatttatggttat---gaatatggtggaggcggagctacgcaagaacaagtatactacacacaacagcag |
311 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
9019638 |
tcaaaatattcatcatccaccacagc---ctttttatggttattatgaatatggtggag------ctaagcaagaacaagtattctacccacaacagcag |
9019728 |
T |
|
| Q |
312 |
cctgcaaatgcaaatgcacctcctcagtaccaatccatgacc |
353 |
Q |
| |
|
| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9019729 |
c------atgcaaatgcacctccttagtaccaatctatgacc |
9019764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 8978382 - 8978469
Alignment:
| Q |
322 |
caaatgcacctcctcagtaccaatccatgaccccagcacctgctgcagcagcactattagatgtttcaaaacaatttcctatagacaa |
409 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||| ||| || | | ||| |||||||||||||||||||| |||| |
|
|
| T |
8978382 |
caaatgcaccttctcagtaccaatccatgaccacagcagtcgctgctgcaacaatgtccgatttttcaaaacaatttcctatatacaa |
8978469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 1253590 - 1253553
Alignment:
| Q |
275 |
agctacgcaagaacaagtatactacacacaacagcagc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1253590 |
agctacgcaagaacaagtatactacacacaaaagcagc |
1253553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University