View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_16 (Length: 462)

Name: NF13926_low_16
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_16
NF13926_low_16
[»] scaffold0040 (2 HSPs)
scaffold0040 (303-442)||(60480-60626)
scaffold0040 (303-442)||(67956-68102)
[»] chr3 (11 HSPs)
chr3 (190-303)||(38372051-38372161)
chr3 (11-120)||(38371872-38371981)
chr3 (304-444)||(50158345-50158491)
chr3 (331-444)||(45677729-45677849)
chr3 (304-444)||(39351039-39351183)
chr3 (303-444)||(32285538-32285678)
chr3 (303-396)||(30006644-30006737)
chr3 (362-444)||(32280651-32280734)
chr3 (331-444)||(31112552-31112672)
chr3 (304-374)||(32280568-32280636)
chr3 (303-359)||(39032554-39032610)
[»] scaffold0502 (2 HSPs)
scaffold0502 (302-444)||(4415-4554)
scaffold0502 (302-444)||(9115-9254)
[»] chr6 (3 HSPs)
chr6 (302-444)||(18338291-18338430)
chr6 (304-444)||(7553236-7553376)
chr6 (303-359)||(9973028-9973084)
[»] chr8 (11 HSPs)
chr8 (304-444)||(17497332-17497474)
chr8 (304-395)||(45265965-45266054)
chr8 (331-394)||(38151183-38151248)
chr8 (331-394)||(38144123-38144188)
chr8 (304-397)||(34547926-34548018)
chr8 (399-444)||(38144056-38144101)
chr8 (304-397)||(39517585-39517680)
chr8 (303-357)||(32037919-32037973)
chr8 (399-444)||(38151116-38151161)
chr8 (303-359)||(18325119-18325175)
chr8 (303-359)||(44626385-44626441)
[»] chr4 (5 HSPs)
chr4 (302-440)||(54256433-54256573)
chr4 (303-435)||(18890933-18891073)
chr4 (398-430)||(18888135-18888167)
chr4 (323-359)||(33361882-33361918)
chr4 (331-359)||(44160556-44160584)
[»] chr5 (4 HSPs)
chr5 (304-396)||(35940945-35941036)
chr5 (304-390)||(22730064-22730150)
chr5 (399-444)||(36950045-36950090)
chr5 (304-440)||(10491332-10491471)
[»] chr2 (4 HSPs)
chr2 (331-444)||(24138562-24138683)
chr2 (301-390)||(15144085-15144175)
chr2 (304-395)||(4840382-4840474)
chr2 (331-395)||(39190327-39190392)
[»] chr1 (4 HSPs)
chr1 (364-442)||(39574672-39574752)
chr1 (302-360)||(24515178-24515236)
chr1 (303-394)||(24522961-24523056)
chr1 (303-359)||(47858378-47858434)
[»] chr7 (1 HSPs)
chr7 (411-444)||(32517297-32517330)


Alignment Details
Target: scaffold0040 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 303 - 442
Target Start/End: Complemental strand, 60626 - 60480
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaag---- 398  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||        
T  60626 ttgataaaagttttagaatttagccatggatcattagatacaaattatagcatatcaagacaacaaagaagggataagagattgtgtacctttaaggatt 60527  T
Q  399 ---gattcgttcataaaggatagctgtcagaaggatgagagggatga 442  Q
       ||||||||||||||||||||||||||||||||||||||||||||    
T  60526 aaggattcgttcataaaggatagctgtcagaaggatgagagggatga 60480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 303 - 442
Target Start/End: Complemental strand, 68102 - 67956
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaag---- 398  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||        
T  68102 ttgataaaagttttagaatttagccatggatcattagatacaaattatagcatatcaagacaacaaagaagggataagagattgtgtacctttaaggatt 68003  T
Q  399 ---gattcgttcataaaggatagctgtcagaaggatgagagggatga 442  Q
       ||||||||||||||||||||||||||||||||||||||||||||    
T  68002 aaggattcgttcataaaggatagctgtcagaaggatgagagggatga 67956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 38372051 - 38372161
Alignment:
Q  190 cttttgattttgtttttcttgtttcaaagttggttgaagaatggtgctaaatttagtaggattgtttttaataagtttggaagatagtttggtttgctgt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  38372051 cttttgattttgtttttcttgtttcaaagttggttgaagaatggtgctaaatttagtaggattgtttt---taagtttggaagatagtttggtttgctgt 38372147  T
Q  290 atacatgtatcctt 303  Q
    ||||||||||||||    
T  38372148 atacatgtatcctt 38372161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 38371872 - 38371981
Alignment:
Q  11 cagagatggagttgggtgcatcatcttcttgttcttctaaatgtgagttgtaaggagcatcattggttgtggaggagacagctcctacggtggaagacat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  38371872 cagagatggagttgggtgcatcatcttcttgttcttctaaatgtgagttgtaaggaacatcgttggttgtggaggagacggctcctacggtggaagacat 38371971  T
Q  111 tttcaacctt 120  Q
    ||||||||||    
T  38371972 tttcaacctt 38371981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 304 - 444
Target Start/End: Complemental strand, 50158491 - 50158345
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaag----- 398  Q
    |||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||         
T  50158491 tgataaaagttttagaatttagca-tggatcattagatacaagttatagcatatcaagacaataaagaagggataagagattgtgtacctttaaggatta 50158393  T
Q  399 --gattcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
      ||||||||||||||  |||||||||||||||||||| || ||||||    
T  50158392 aggattcgttcataaaaaatagctgtcagaaggatgagcggaatgact 50158345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 45677729 - 45677849
Alignment:
Q  331 gatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacct-------ttaaggattcgttcataaaggatagctgtc 423  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||       |||||||||||||||||||||||| |||||    
T  45677729 gatcattagatacaaattatagtatatcaagacaacaaagaagggataagagattatgtacctttaaggattaaggattcgttcataaaggataactgtc 45677828  T
Q  424 agaaggatgagagggatgact 444  Q
    | |||||||||||||||||||    
T  45677829 acaaggatgagagggatgact 45677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 304 - 444
Target Start/End: Complemental strand, 39351183 - 39351039
Alignment:
Q  304 tgataaaagttttagaa--tatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggat 401  Q
    ||||||||||||||| |  | |||| || |||||||||||| ||||||||| ||||||| ||||||||||||  | |||||||||||||||||||||  |    
T  39351183 tgataaaagttttagtaattttagccatggatcattagatataaattatagtatatcaagacaacaaagaagaaataagagattgtgtacctttaagatt 39351084  T
Q  402 --tcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
      |  ||||| || |||||||||||||||||||||||||||||||    
T  39351083 tatgattcatgaatgatagctgtcagaaggatgagagggatgact 39351039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 32285538 - 32285678
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggatt 402  Q
    ||||||||||||||||||| ||   || ||||  |||||||||||||||||||||||  ||||||||||||| | ||||||||||||| |||| || |||    
T  32285538 ttgataaaagttttagaatttaatcatggatc--tagatacaaattatagcatatcatgacaacaaagaaggaacaagagattgtgtatcttt-agaatt 32285634  T
Q  403 cg--ttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
     |  || || || ||||||||||||||||||||||| |||||||    
T  32285635 aggtttgatgaatgatagctgtcagaaggatgagagagatgact 32285678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 396
Target Start/End: Original strand, 30006644 - 30006737
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtaccttta 396  Q
    ||||||||| || ||| || |||| || ||| ||||||||||||||||| |||||||  |||| |||||||| | |||||||||||||||||||    
T  30006644 ttgataaaaattataggatttagccatggattattagatacaaattataacatatcatgacaataaagaaggaacaagagattgtgtaccttta 30006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 32280651 - 32280734
Alignment:
Q  362 acaacaaagaagggagaagagattgtgtacctttaaggattcg--ttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||||||||||| | ||||||||||||||||||| | ||| |  || || |||||||| |||||||||||||||||||||||||    
T  32280651 acaacaaagaaggaacaagagattgtgtaccttta-gaattaggtttgatgaaggatagttgtcagaaggatgagagggatgact 32280734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 444
Target Start/End: Complemental strand, 31112672 - 31112552
Alignment:
Q  331 gatcattagatacaaattatagcatatcaaaacaacaaagaagg-------gagaagagattgtgtacctttaaggattcg--ttcataaaggatagctg 421  Q
    ||||||||||||||||||| ||||| |||| |||  ||||||||       || ||||||||||| ||||||||| ||| |  ||||| |||||||||||    
T  31112672 gatcattagatacaaattacagcatttcaatacagtaaagaaggaataagagataagagattgtg-acctttaag-attaggattcatgaaggatagctg 31112575  T
Q  422 tcagaaggatgagagggatgact 444  Q
    ||||||||| |||||||||||||    
T  31112574 tcagaaggaggagagggatgact 31112552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 32280568 - 32280636
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagg 374  Q
    |||||||||||||||||| ||   || ||||  |||||||||||||||||||||||  |||||||||||||    
T  32280568 tgataaaagttttagaatttaatcatggatc--tagatacaaattatagcatatcatgacaacaaagaagg 32280636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 39032554 - 39032610
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca 359  Q
    ||||||||||||||| |||  ||| || ||||| ||||||||| |||||||||||||    
T  39032554 ttgataaaagttttataattaagccatggatcagtagatacaagttatagcatatca 39032610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 302 - 444
Target Start/End: Complemental strand, 4554 - 4415
Alignment:
Q  302 tttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggat 401  Q
    |||||||||||||||||  | |||| || |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||  |||||||    
T  4554 tttgataaaagttttagtgtttagccatggatcattagatacagattatagcatatcaagacaacaaagaagggataagagattgtgtacc--taaggat 4457  T
Q  402 tcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||    
T  4456 tcgttcataaatgatagatgtaagaa-gatgagagggatgact 4415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 302 - 444
Target Start/End: Complemental strand, 9254 - 9115
Alignment:
Q  302 tttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggat 401  Q
    |||||||||||||||||  | |||| || |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||  |||||||    
T  9254 tttgataaaagttttagtgtttagccatggatcattagatacagattatagcatatcaagacaacaaagaagggataagagattgtgtacc--taaggat 9157  T
Q  402 tcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||    
T  9156 tcgttcataaatgatagatgtaagaa-gatgagagggatgact 9115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 302 - 444
Target Start/End: Complemental strand, 18338430 - 18338291
Alignment:
Q  302 tttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggat 401  Q
    |||||||||||||||||  | |||| || |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||  |||||||    
T  18338430 tttgataaaagttttagtgtttagccatggatcattagatacagattatagcatatcaagacaacaaagaagggataagagattgtgtacc--taaggat 18338333  T
Q  402 tcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||||    
T  18338332 tcgttcataaatgatagatgtaagaa-gatgagagggatgact 18338291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 304 - 444
Target Start/End: Original strand, 7553236 - 7553376
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggattc 403  Q
    |||||||| ||||||  | |||| || |||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  7553236 tgataaaaattttagtgtttagccatggatcattatatacaaattatagcatatcaagacaacaaagaaggaataagagattgtgtacctttaaggattc 7553335  T
Q  404 gttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
     ||||  || ||||||||||  |||||||||||||||||||    
T  7553336 attcacgaaagatagctgtctaaaggatgagagggatgact 7553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 9973084 - 9973028
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca 359  Q
    |||||||||||||||| ||  ||| || ||||| ||||||||| |||||||||||||    
T  9973084 ttgataaaagttttaggattcagccatggatcagtagatacaagttatagcatatca 9973028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 444
Target Start/End: Original strand, 17497332 - 17497474
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggattc 403  Q
    |||||||||||| || || |||  || |||||||||||||||||||||||||||||| |||  |||||||| | |||||||||||||||||||||  ||     
T  17497332 tgataaaagtttaaggatttagtcatggatcattagatacaaattatagcatatcaatacagtaaagaaggaataagagattgtgtacctttaagattta 17497431  T
Q  404 g--ttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    |  ||||| ||||||||||||||||||||||||| | ||||||    
T  17497432 ggattcatgaaggatagctgtcagaaggatgagaagaatgact 17497474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 45265965 - 45266054
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtaccttt 395  Q
    ||||||||||||||| || |||| || ||||||||||||||||||| |||||||||||  ||||||||||| | ||||||||||||||||||    
T  45265965 tgataaaagttttagtatttagccatggatcattagatacaaattacagcatatcaaa--aacaaagaaggaataagagattgtgtaccttt 45266054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 38151248 - 38151183
Alignment:
Q  331 gatcattagatacaaattatagcatatcaaaacaaca--aagaagggagaagagattgtgtacctt 394  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||| | |||||||||||||||||    
T  38151248 gatcattagatacaaattatagcatatcaagacaacaacaagaaggaataagagattgtgtacctt 38151183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 38144188 - 38144123
Alignment:
Q  331 gatcattagatacaaattatagcatatcaaaacaaca--aagaagggagaagagattgtgtacctt 394  Q
    |||||||||||||||||||||||||||||  ||||||  ||||||| | |||||||||||||||||    
T  38144188 gatcattagatacaaattatagcatatcaggacaacaacaagaaggaataagagattgtgtacctt 38144123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 34547926 - 34548018
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaa 397  Q
    ||||||||||||||| || | |  || |||||||||||||||||||||||||||| |  |||||||||||| | ||||||||||| | ||||||    
T  34547926 tgataaaagttttaggattttgacatggatcattagatacaaattatagcatatc-atgcaacaaagaaggaacaagagattgtgcatctttaa 34548018  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 38144101 - 38144056
Alignment:
Q  399 gattcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  38144101 gattcattcatgaaggatagctgtcagaaggatgagagggatgact 38144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 39517680 - 39517585
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca-aaacaacaaagaaggga-gaagagattgtgtacctttaa 397  Q
    ||||||||| |||||||| |||| ||  |||| ||||||||| |||||||||||||  || ||||||||| | | ||||| |||||||||||||||    
T  39517680 tgataaaagatttagaatttagccatgtatcactagatacaagttatagcatatcatcaataacaaagaatgaatgaagaaattgtgtacctttaa 39517585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 32037919 - 32037973
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatat 357  Q
    ||||||||||||||||  | |||| || ||||| |||||||||||||||||||||    
T  32037919 ttgataaaagttttagtgtttagccatggatcactagatacaaattatagcatat 32037973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 38151161 - 38151116
Alignment:
Q  399 gattcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||| ||||| ||||||||||||||||||||||||| | ||||||    
T  38151161 gattcattcatgaaggatagctgtcagaaggatgagatgaatgact 38151116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 18325175 - 18325119
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca 359  Q
    |||||||||| ||||| || |||| || ||| ||||||||||| |||||||||||||    
T  18325175 ttgataaaagatttaggatttagccatggattattagatacaagttatagcatatca 18325119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 44626441 - 44626385
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca 359  Q
    ||||||||||||||||  | |||| ||  |||| |||||||||||||||||||||||    
T  44626441 ttgataaaagttttagtttttagccatgaatcactagatacaaattatagcatatca 44626385  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 440
Target Start/End: Complemental strand, 54256573 - 54256433
Alignment:
Q  302 tttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtacctttaaggat 401  Q
    |||||||||| ||| || || ||||  | |||||||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||| |  |    
T  54256573 tttgataaaaatttaagtatttagccgtggatcattagatacaaattatagcatatcaagacaacaaaaaaggaataagagattgtgtacctttatgatt 54256474  T
Q  402 tcg--ttcataaaggatagctgtcagaaggatgagagggat 440  Q
    | |  |||||  ||||||| |||||||||||||||||||||    
T  54256473 taggattcatgcaggatagttgtcagaaggatgagagggat 54256433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 435
Target Start/End: Original strand, 18890933 - 18891073
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaa-aacaacaaagaagggagaagagattgtgtacctttaaggat 401  Q
    |||||||||||||||| ||  ||  ||  |||| |||||||||||||||||||||||  || |||||  || | | ||||| ||||||||||||||||||    
T  18890933 ttgataaaagttttaggattcagtcattaatcactagatacaaattatagcatatcatcaataacaagcaaagaataagaggttgtgtacctttaaggat 18891032  T
Q  402 t-------cgttcataaaggatagctgtcagaaggatgaga 435  Q
    |       | |||||||||||||||||||||||||||||||    
T  18891033 tatggattctttcataaaggatagctgtcagaaggatgaga 18891073  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 430
Target Start/End: Original strand, 18888135 - 18888167
Alignment:
Q  398 ggattcgttcataaaggatagctgtcagaagga 430  Q
    ||||| |||||||||||||||||||||||||||    
T  18888135 ggatttgttcataaaggatagctgtcagaagga 18888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 33361918 - 33361882
Alignment:
Q  323 tagcaatcgatcattagatacaaattatagcatatca 359  Q
    |||| |||||||| |||||||||||||||||||||||    
T  33361918 tagccatcgatcactagatacaaattatagcatatca 33361882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 359
Target Start/End: Original strand, 44160556 - 44160584
Alignment:
Q  331 gatcattagatacaaattatagcatatca 359  Q
    |||||||||||||||||||||||||||||    
T  44160556 gatcattagatacaaattatagcatatca 44160584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 396
Target Start/End: Original strand, 35940945 - 35941036
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgtaccttta 396  Q
    ||||||||| |||| ||| |||| || ||||||||||||||||||||||||||| || |||| |||||||| | |||||||||||||||||||    
T  35940945 tgataaaagatttataat-tagccatggatcattagatacaaattatagcatattaacacaataaagaaggaataagagattgtgtaccttta 35941036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 22730150 - 22730064
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaacaaagaagggagaagagattgtgta 390  Q
    ||||||||||| ||| || |||  || ||| |||||||||||||||||||||||||  | ||||||||||| | |||||||||||||    
T  22730150 tgataaaagttataggatttagtcatagatgattagatacaaattatagcatatcatgataacaaagaaggaataagagattgtgta 22730064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 36950045 - 36950090
Alignment:
Q  399 gattcgttcataaaggatagctgtcagaaggatgagagggatgact 444  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  36950045 gattcattcatgaaggatagctgtcagaaggatgagagggatgact 36950090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 440
Target Start/End: Complemental strand, 10491471 - 10491332
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaac-aacaaagaagggagaagagattgtgtacctttaaggatt 402  Q
    ||||||||||||||  || | || || |||||||||||||||||||||| ||||||     ||||||||||| | |||| ||||| ||||| || |  ||    
T  10491471 tgataaaagttttaatatttcgccatggatcattagatacaaattatagtatatcatcggtaacaaagaaggaataagaaattgtatacctgtaggattt 10491372  T
Q  403 cg--ttcataaaggatagctgtcagaaggatgagagggat 440  Q
     |  ||||| ||||||||||||||||||||||||||||||    
T  10491371 aggattcatgaaggatagctgtcagaaggatgagagggat 10491332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 444
Target Start/End: Complemental strand, 24138683 - 24138562
Alignment:
Q  331 gatcattagatacaaattatagcatatcaaaac-aacaaagaagggagaagagattgtgtacctttaaggatt-------cgttcataaaggatagctgt 422  Q
    ||||| |||||||||||||||||||||||  |  ||||| ||| | | |||||||||||||||||||||||||       |||||||||||||||| |||    
T  24138683 gatcactagatacaaattatagcatatcatcagtaacaaggaaagaataagagattgtgtacctttaaggattaaggattcgttcataaaggatagttgt 24138584  T
Q  423 cagaaggatgagagggatgact 444  Q
    |||||||||||||| |||||||    
T  24138583 cagaaggatgagagagatgact 24138562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 15144085 - 15144175
Alignment:
Q  301 ctttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaaaacaac-aaagaagggagaagagattgtgta 390  Q
    ||||||||||||||| ||| | |||| || ||| |||||||||||||||||||||| ||| ||||| ||| |||| | |||||||||||||    
T  15144085 ctttgataaaagtttaagagtttagccatggattattagatacaaattatagcatagcaatacaacaaaaaaaggaataagagattgtgta 15144175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 4840382 - 4840474
Alignment:
Q  304 tgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca-aaacaacaaagaagggagaagagattgtgtaccttt 395  Q
    ||||| ||||||||  || |||| || |||| ||| ||||||||||||||||||||  || || |||||||| |||||| |||||||||||||    
T  4840382 tgatataagttttaatatttagccatagatcgttacatacaaattatagcatatcatcaagaataaagaaggaagaagaaattgtgtaccttt 4840474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 39190392 - 39190327
Alignment:
Q  331 gatcattagatacaaattatagcatatca-aaacaacaaagaagggagaagagattgtgtaccttt 395  Q
    ||||| |||||||||||||||||||||||  || || |||||||| || ||| |||||||||||||    
T  39190392 gatcactagatacaaattatagcatatcatcaataataaagaaggaaggagaaattgtgtaccttt 39190327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 442
Target Start/End: Complemental strand, 39574752 - 39574672
Alignment:
Q  364 aacaaagaagggagaagagattgtgtacctttaaggattcg--ttcataaaggatagctgtcagaaggatgagagggatga 442  Q
    ||||||||||| | |||| ||||||||||||||||   | |  ||||| ||||||| ||||||||||||||||||||||||    
T  39574752 aacaaagaaggaataagaaattgtgtacctttaagatgtaggattcatgaaggataactgtcagaaggatgagagggatga 39574672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 24515178 - 24515236
Alignment:
Q  302 tttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaa 360  Q
    ||||||||||||||||| ||  ||| || ||||| ||||||||| ||||||||||||||    
T  24515178 tttgataaaagttttagtattcagccatggatcactagatacaagttatagcatatcaa 24515236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 24522961 - 24523056
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatcaa----aacaacaaagaagggagaagagattgtgtacctt 394  Q
    |||||||||||||||| ||  ||| || ||||| ||||||||| ||||||||||||||    || | ||||||||| ||||||  |||||||||||    
T  24522961 ttgataaaagttttagtattcagccatggatcactagatacaagttatagcatatcaatatcaatatcaaagaaggaagaagaatttgtgtacctt 24523056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 47858434 - 47858378
Alignment:
Q  303 ttgataaaagttttagaatatagcaatcgatcattagatacaaattatagcatatca 359  Q
    ||||||||||||||||  | |||  || ||||||||||||||||||||| |||||||    
T  47858434 ttgataaaagttttagtgtttaggcatggatcattagatacaaattataacatatca 47858378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Complemental strand, 32517330 - 32517297
Alignment:
Q  411 aaggatagctgtcagaaggatgagagggatgact 444  Q
    |||||||| |||||||||||||||||||||||||    
T  32517330 aaggatagttgtcagaaggatgagagggatgact 32517297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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