View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_18 (Length: 455)
Name: NF13926_low_18
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 2724123 - 2724563
Alignment:
| Q |
1 |
taatagaatgacattgaggattaggaacacataagcacgccacttctcaactaagaaactctttagacaaaccattagaagaaatgtacctaaggtgaac |
100 |
Q |
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| T |
2724123 |
taatagaatgacattgaggattaggaacacataagcacgccacttctcaactaagaaactctttagacaaaccattagaagaaatgtacctaaggtgaac |
2724222 |
T |
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| Q |
101 |
attatagtttgtatactatcttcactgaactcttcatctttggtttctctttcacattcactcttcttcatctccatattggaagaatttcttaattgtt |
200 |
Q |
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| T |
2724223 |
attatagtttgtatactatcttcattgaactcttcctctttggtttctctttcacattcactcttcttcatctccatattggaagaatttcttaattgtt |
2724322 |
T |
|
| Q |
201 |
gcttgcttagtgttgagaggtatagagaactagaaaacttgactataaatcaatgtgagaaagtggtttcatgtggaagcaagaatgatagttatgttag |
300 |
Q |
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| T |
2724323 |
gcttgcttagtgttgagaggtatagagaactagaaaacttgactataaatcaatgtgagaaagtggtttcatgtggaagcaagaatgatagttatgttag |
2724422 |
T |
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| Q |
301 |
tgatgtgggggacttcataaccacaatgaaaggataaagtagtgatgatgagagaatataaccaaaatgtgagtgtgagtggtgtaaggtgatgaggaga |
400 |
Q |
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| T |
2724423 |
tgatgtgggggacttcataaccacaatgaaaggataaagtagtgatgatgagagaatataaccaaaatgtgagtgtgagtggtgtaaggtgatgaggaga |
2724522 |
T |
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| Q |
401 |
caagtaaacataatacaaacaaggaatgttgctttgttatt |
441 |
Q |
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| T |
2724523 |
caattaaacataatacaaacaaggaatgttgctttgttatt |
2724563 |
T |
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