View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_20 (Length: 434)
Name: NF13926_low_20
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 40308199 - 40308421
Alignment:
| Q |
10 |
agaagcaaaggagaactttattccacataaattgacactgctatataccatcaattcaataaattatttattattcatcactcatcgatcgatcacgata |
109 |
Q |
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| T |
40308199 |
agaaacaaaggagaactttattccacataaattgacactgctatataccatcaattcaataaattatttattattcatcactcatcgatcgatcacaata |
40308298 |
T |
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| Q |
110 |
atgcatacaagcttttttataacaaaaaacaatgctcacaaatagccagatctaagggactttcacttatacaacttacctacaccccttctaatatgtg |
209 |
Q |
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| T |
40308299 |
atgcatacaagtttttttataacaaaaaacaatgctcacaaatagccagatctaagggactttcgcttatacagcttacctacaccccttctaatatgtt |
40308398 |
T |
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| Q |
210 |
gcttaaatattgctatatatata |
232 |
Q |
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| T |
40308399 |
gtttaaatattgctatatatata |
40308421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 40308646 - 40308802
Alignment:
| Q |
264 |
gtaaatggatatgacattgacatgtacataaaagtatgtggcacaaacgttatgaaccactaattttgccgacgaattgaattaatgtttat-aaatata |
362 |
Q |
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| T |
40308646 |
gtaaatggatataacattgacatgtacttaaaagtatgtggcacaaacgttatgaaccactgattttgccgacgagttgaattaatgtttataaaatata |
40308745 |
T |
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| Q |
363 |
tgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattg |
419 |
Q |
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| T |
40308746 |
tgtatagtttggttttggacatttaaatgcctgaaagacactcatgtggggtcattg |
40308802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 40318139 - 40318269
Alignment:
| Q |
289 |
acataaaagtatgtggcacaaacgttatgaaccactaattttgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaa |
388 |
Q |
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| T |
40318139 |
acataaaagtatgtggcacaaacgttatgaaccactaattttgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaa |
40318238 |
T |
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| Q |
389 |
atgcctgaaagacactcatgtggggtcattg |
419 |
Q |
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| T |
40318239 |
atgcctgaaagacactcatgtggggtcattg |
40318269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 40328213 - 40328343
Alignment:
| Q |
289 |
acataaaagtatgtggcacaaacgttatgaaccactaattttgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaa |
388 |
Q |
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| T |
40328213 |
acataaaagtatgtggcacaaacgttatgaaccactaattttgccgacgaattgaattaatgtttataaatatatgtatagtttggttttggacatttaa |
40328312 |
T |
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| Q |
389 |
atgcctgaaagacactcatgtggggtcattg |
419 |
Q |
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| T |
40328313 |
atgcctgaaagacactcatgtggggtcattg |
40328343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 40318040 - 40318086
Alignment:
| Q |
169 |
ctttcacttatacaacttacctacaccccttctaatatgtggcttaa |
215 |
Q |
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| T |
40318040 |
ctttgacttatacaacttacctataccccttctaatttttggcttaa |
40318086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 40328114 - 40328160
Alignment:
| Q |
169 |
ctttcacttatacaacttacctacaccccttctaatatgtggcttaa |
215 |
Q |
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| T |
40328114 |
ctttgacttatacaacttacctataccccttctaatttttggcttaa |
40328160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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