View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13926_low_23 (Length: 418)
Name: NF13926_low_23
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 22 - 411
Target Start/End: Complemental strand, 29781588 - 29781197
Alignment:
| Q |
22 |
tgggcaaagtgtaattcaattctaaccaaattttataaagtttcttgcaatcaaaacacaactgattacaaagcaatcccttcaagaaaccacttctact |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29781588 |
tgggcaaagtgtaattcaattctaaccaaattttataaagtttcttgcaatcaaaacacaactgattacaaagcaatcccttcaagaaaccacttctact |
29781489 |
T |
|
| Q |
122 |
aagtgctaaaaatattcatcatcattatatggttaatgaatttaagaatttatcatgatgtgttatgttgacatattggtgtatagggaaggcttccctt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29781488 |
aagtgctaaaaatattcatcatcattatatggttaatgaatttaagaatttatcatgatgtgtgatgttgacatattggtgtaaagggaaggcttccctt |
29781389 |
T |
|
| Q |
222 |
tcttttgatcactttttgtgatgtggtaattgacccttttgtgggaaaaatgttggtt--ctctatgcctaattcagttcaactccagatagtatatttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29781388 |
tcttttgatcactttttgtgatgtggtaattaacccttttgtgggaaaaatgttggttctctctatgcctaattcagttcaactccagatagtatatttg |
29781289 |
T |
|
| Q |
320 |
cttatctttcaagttatttaccacgttgcaatttatagcttaagtgttgtaaactaaggtactttttctagtcatatgcttcacctttgctt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29781288 |
cttatctttcaagttatttaccacgttgcaatttatagcttaagtgttgtaaactaaggtactttttctagtcatatgcttcacctttgctt |
29781197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 5566191 - 5566117
Alignment:
| Q |
102 |
ttcaagaaaccacttctactaagtgctaaaaatattcatcatcattatatggttaatgaatttaagaatttatcatga |
179 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
5566191 |
ttcaagaaaccgcttctactaggtgctcaaaatattcatcatc---atataattaatgaatttaagaatttatcatga |
5566117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 10301340 - 10301414
Alignment:
| Q |
102 |
ttcaagaaaccacttctactaagtgctaaaaatattcatcatcattatatggttaatgaatttaagaatttatcatga |
179 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10301340 |
ttcaagaaaccgcttctactaggtgctcaaaatattcatcatc---atataattaatgaatttaagaatttatcatga |
10301414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 27057426 - 27057352
Alignment:
| Q |
102 |
ttcaagaaaccacttctactaagtgctaaaaatattcatcatcattatatggttaatgaatttaagaatttatcatga |
179 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
27057426 |
ttcaagaaaccgcttctactaggtgctcaaaatattcatcatgat---atacttaatgaatttaagaatttatcatga |
27057352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University