View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_25 (Length: 412)

Name: NF13926_low_25
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_25
NF13926_low_25
[»] chr7 (16 HSPs)
chr7 (206-394)||(4803187-4803375)
chr7 (254-394)||(47416267-47416407)
chr7 (7-106)||(14682710-14682809)
chr7 (7-106)||(30474884-30474982)
chr7 (7-104)||(17238358-17238454)
chr7 (1-67)||(8684952-8685018)
chr7 (137-211)||(17236919-17236993)
chr7 (4-72)||(17278636-17278704)
chr7 (4-72)||(30765904-30765972)
chr7 (13-72)||(18298067-18298126)
chr7 (206-252)||(47416837-47416883)
chr7 (7-49)||(14682134-14682176)
chr7 (7-49)||(16956167-16956209)
chr7 (7-67)||(25443240-25443301)
chr7 (18-67)||(17236299-17236350)
chr7 (7-49)||(30474518-30474560)
[»] chr6 (7 HSPs)
chr6 (1-211)||(902366-902577)
chr6 (18-67)||(901659-901708)
chr6 (4-72)||(12261244-12261312)
chr6 (4-72)||(27129079-27129147)
chr6 (4-72)||(16146315-16146383)
chr6 (20-67)||(20746382-20746429)
chr6 (20-56)||(20746437-20746473)
[»] chr4 (14 HSPs)
chr4 (1-211)||(13630324-13630529)
chr4 (7-102)||(44183542-44183636)
chr4 (7-106)||(45044613-45044711)
chr4 (7-104)||(50282652-50282748)
chr4 (137-211)||(44183420-44183494)
chr4 (137-211)||(9091805-9091879)
chr4 (4-104)||(9091660-9091758)
chr4 (137-211)||(50282534-50282608)
chr4 (4-67)||(9087095-9087158)
chr4 (6-49)||(45045065-45045108)
chr4 (13-55)||(26281017-26281059)
chr4 (18-67)||(26280323-26280372)
chr4 (18-63)||(44182798-44182845)
chr4 (18-67)||(50281915-50281966)
[»] chr3 (8 HSPs)
chr3 (7-106)||(54834173-54834272)
chr3 (7-104)||(52255247-52255343)
chr3 (137-211)||(52255129-52255203)
chr3 (4-72)||(34817566-34817634)
chr3 (7-57)||(33389411-33389461)
chr3 (4-72)||(32305024-32305092)
chr3 (4-72)||(42540954-42541022)
chr3 (18-66)||(52254514-52254564)
[»] chr5 (6 HSPs)
chr5 (7-106)||(38385111-38385209)
chr5 (4-72)||(6794535-6794603)
chr5 (4-72)||(23082776-23082844)
chr5 (7-49)||(38385577-38385619)
chr5 (7-67)||(13824397-13824458)
chr5 (7-67)||(24041980-24042041)
[»] chr1 (14 HSPs)
chr1 (7-100)||(24509185-24509277)
chr1 (18-103)||(52751290-52751375)
chr1 (7-106)||(50124321-50124416)
chr1 (137-211)||(24509068-24509142)
chr1 (18-82)||(29021826-29021890)
chr1 (7-67)||(52750392-52750452)
chr1 (7-67)||(31697356-31697416)
chr1 (6-72)||(47112331-47112397)
chr1 (156-210)||(52751084-52751137)
chr1 (4-67)||(36142350-36142413)
chr1 (18-67)||(968164-968213)
chr1 (18-67)||(968215-968264)
chr1 (21-72)||(968917-968968)
chr1 (18-77)||(24508445-24508506)
[»] chr2 (8 HSPs)
chr2 (7-67)||(10708372-10708432)
chr2 (7-67)||(12602345-12602406)
chr2 (4-72)||(20685867-20685935)
chr2 (4-72)||(40468848-40468916)
chr2 (12-67)||(3093384-3093438)
chr2 (20-72)||(8029762-8029814)
chr2 (4-72)||(19298323-19298391)
chr2 (4-72)||(28189683-28189751)
[»] scaffold0202 (1 HSPs)
scaffold0202 (4-72)||(21961-22029)
[»] chr8 (2 HSPs)
chr8 (4-72)||(13462342-13462410)
chr8 (1-41)||(9319119-9319159)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 206 - 394
Target Start/End: Original strand, 4803187 - 4803375
Alignment:
Q  206 tcgtaactagaaatgccagttctaataacaaacttaactactggatagtagctatagcctatagccaaatttaaaaatcaacttatttcaatttcaagat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803187 tcgtaactagaaatgccagttctaataacaaacttaactactggatagtagctatagcctatagccaaatttaaaaatcaacttatttcaatttcaagat 4803286  T
Q  306 catcactgatatcatagcaaaggactgtttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacat 394  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803287 catcactgatatcatagcaaaggactatttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacat 4803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 254 - 394
Target Start/End: Complemental strand, 47416407 - 47416267
Alignment:
Q  254 tagctatagcctatagccaaatttaaaaatcaacttatttcaatttcaagatcatcactgatatcatagcaaaggactgtttccagcttgacactataaa 353  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  47416407 tagctataacctatagccaaatttaaaaatcaacttatttcaatttcaagatcattactgatttcatagcaaaggactgtttccagcttgacacaataaa 47416308  T
Q  354 atgaagcagagttagaacaattttttaatttcttccaacat 394  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47416307 atgaagcagagttagaacaattttttaatttcttccaacat 47416267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 14682809 - 14682710
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||    
T  14682809 tcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttattcactaaaaaaaatcactttaatttaccaaccaacaa 14682710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 30474982 - 30474884
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  30474982 tcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaa-aaaaacactttaatttaccaaacaacaa 30474884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 17238454 - 17238358
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaac 104  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  17238454 tcatcatcttcagcaaatctataaacataatcaatttcataactcaatcaacaatcaatttgttca-taaaaaaaatcactttaatttaccaaacaac 17238358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8684952 - 8685018
Alignment:
Q  1 tctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    |||||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8684952 tctttttcatgatcttcatcaaacctataaacataatcaattttataactcaatcaacaaccaattt 8685018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 17236993 - 17236919
Alignment:
Q  137 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 211  Q
    ||||||| ||||||||||| |||||||||||||| || ||||||||| |||||||||| ||||||||||| ||||    
T  17236993 acaacaactgctatgcttcactaaagatatcaataaactaatacctttaccttataacaactcatccaattgtaa 17236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 17278636 - 17278704
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  17278636 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 17278704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 30765904 - 30765972
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  30765904 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 30765972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 18298126 - 18298067
Alignment:
Q  13 tctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||    
T  18298126 tcttcatcaaatctataaacataaacaatttcatatctcaatcaataaccaattttttca 18298067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 47416883 - 47416837
Alignment:
Q  206 tcgtaactagaaatgccagttctaataacaaacttaactactggata 252  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  47416883 tcgtaactagaaatgccagttctaataaccaactcaactactggata 47416837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 14682134 - 14682176
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataac 49  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  14682134 tcattatcttcatcaaatctataaacataatcaattttataac 14682176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 16956167 - 16956209
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataac 49  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  16956167 tcattatcttcatcaaatctataaacataatcaattttataac 16956209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 25443240 - 25443301
Alignment:
Q  7 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 67  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||||||| | |||||||||    
T  25443240 tcataatcttcatcaaatctataaacataaattaatttcataactcaatctataaccaattt 25443301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 17236299 - 17236350
Alignment:
Q  18 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||||||||||||||  ||| |||||||||||||||||| |||||||||    
T  17236299 atcaaatctataaacatataatccatttcataactcaatcaataaccaattt 17236350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 30474518 - 30474560
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataac 49  Q
    |||| ||||| |||||||||||||||||| |||||||||||||    
T  30474518 tcatcatcttcatcaaatctataaacatactcaatttcataac 30474560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 902577 - 902366
Alignment:
Q  1 tctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902577 tctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaa 902478  T
Q  101 caacaa-nnnnnnnnnnnnaaatctaaatccaaaaccacaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactc 199  Q
    ||||||             ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902477 caacaattttttttttttaaaatccaaatccaaaaccacaacaactgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactc 902378  T
Q  200 atccaatcgtaa 211  Q
    ||||||||||||    
T  902377 atccaatcgtaa 902366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 901659 - 901708
Alignment:
Q  18 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  901659 atcaaatctataaacataatctatttcataactcaatcaataaccaattt 901708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 12261312 - 12261244
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  12261312 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 12261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 27129079 - 27129147
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  27129079 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 27129147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 16146315 - 16146383
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  16146315 ttttcatcatcttcaacaaatatataaacaaaatcaatttcataacttaatcaataaccaattttttca 16146383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 20746429 - 20746382
Alignment:
Q  20 caaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  20746429 caaatatataaacataatcaatttcataacttaatcaataaccaattt 20746382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 20746473 - 20746437
Alignment:
Q  20 caaatctataaacataatcaatttcataactcaatca 56  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  20746473 caaatatataaacataatcaatttcataacttaatca 20746437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13630324 - 13630529
Alignment:
Q  1 tctttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13630324 tctttttcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaa-aaaatcactttaatttaccaaa 13630422  T
Q  101 caacaannnnnnnnnnnnaaatctaaatccaaaaccacaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactca 200  Q
    ||| |             ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13630423 caata---ttttttttttaaatccaaatccaaaaccacaac-actgctatgcttctctaaagatatcaatgaactaataccttcaccttataactactca 13630518  T
Q  201 tccaatcgtaa 211  Q
    |||||||||||    
T  13630519 tccaatcgtaa 13630529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 44183636 - 44183542
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaaca 102  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  44183636 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaaatcactttaatttaccaaaca 44183542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 45044613 - 45044711
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 106  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  45044613 tcatcatcttcatcaaatatataaacataatcaatttcataactcaatcaataaccaatttgttcactaaa-aaaatcactttaatttaccaaacaacaa 45044711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 50282748 - 50282652
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaac 104  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||    
T  50282748 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaagtcactttaatttaccaaacaac 50282652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 44183494 - 44183420
Alignment:
Q  137 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 211  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  44183494 acaacaattgctatgcttctctaaagatatcaataaactaataccttcaccttataactactcatccaattgtaa 44183420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 9091805 - 9091879
Alignment:
Q  137 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 211  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||    
T  9091805 acaacaattgctatgcttctctaaagatatcaataaactaatactttcaccttataactactcatccaattgtaa 9091879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 9091660 - 9091758
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaa 103  Q
    ||||||| ||||| ||||||||||||||| || |||||||||||||||||| ||||| |||||||||||  ||  ||||||| |||||||||||||||||    
T  9091660 ttttcatcatcttcatcaaatctataaacgtattcaatttcataactcaattaacaagcaatttgttcatgaa--aaaatcactttaatttaccaaacaa 9091757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 50282608 - 50282534
Alignment:
Q  137 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 211  Q
    ||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||| ||||    
T  50282608 acaacaactgctatgcttctctaaaaatatcaataaactaataccttcaccttataactactcatcaaattgtaa 50282534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 9087158 - 9087095
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  9087158 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattt 9087095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 45045108 - 45045065
Alignment:
Q  6 ttcattatctttatcaaatctataaacataatcaatttcataac 49  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  45045108 ttcatcatcttcatcaaatctataaacataatcaatttcataac 45045065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 26281059 - 26281017
Alignment:
Q  13 tctttatcaaatctataaacataatcaatttcataactcaatc 55  Q
    |||| ||||||||||||||||||| |||||||||| |||||||    
T  26281059 tcttcatcaaatctataaacataaacaatttcatatctcaatc 26281017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26280323 - 26280372
Alignment:
Q  18 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||| |||||||||||| ||||||||| || |||||| |||||||||    
T  26280323 atcaaatttataaacataatgaatttcatatcttaatcaataaccaattt 26280372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 44182798 - 44182845
Alignment:
Q  18 atcaaatctataaacata--atcaatttcataactcaatcaacaacca 63  Q
    ||||||||||||||||||  ||| |||||||||||||||||| |||||    
T  44182798 atcaaatctataaacatataatccatttcataactcaatcaataacca 44182845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 50281915 - 50281966
Alignment:
Q  18 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||||||||||||||  ||| |||||||||||||||||| || ||||||    
T  50281915 atcaaatctataaacatataatccatttcataactcaatcaataatcaattt 50281966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 54834173 - 54834272
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  54834173 tcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttattcactaaaaaaaatcactttaatttaccaaacaacaa 54834272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 52255343 - 52255247
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaac 104  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  52255343 tcatcatcttcatcatatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaaatcactttaatttaccaaacaac 52255247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 52255203 - 52255129
Alignment:
Q  137 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 211  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  52255203 acaacaactgctatgcttctctaaagatatcaataaactaataccttcaccttataactactcttccaattgtaa 52255129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 34817566 - 34817634
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  34817566 ttttcatcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttca 34817634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 33389411 - 33389461
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaa 57  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33389411 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa 33389461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 32305092 - 32305024
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  32305092 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 32305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 42541022 - 42540954
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  42541022 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 42540954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 52254514 - 52254564
Alignment:
Q  18 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatt 66  Q
    ||||||||||||||||||  ||| |||||||||||||||||| ||||||||    
T  52254514 atcaaatctataaacatataatccatttcataactcaatcaataaccaatt 52254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 38385111 - 38385209
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 106  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  38385111 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaa-aaaatcactttaatttaccaaacaacaa 38385209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 6794603 - 6794535
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  6794603 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 6794535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 23082776 - 23082844
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| |  |||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  23082776 ttttcatcatcttcaataaatatataaacataatcaatttcataacttaatcaataaccaattttttca 23082844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 38385619 - 38385577
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataac 49  Q
    |||| ||||| ||||||||||||||||||||||||||||||||    
T  38385619 tcatcatcttcatcaaatctataaacataatcaatttcataac 38385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 13824458 - 13824397
Alignment:
Q  7 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 67  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||    
T  13824458 tcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 13824397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 24041980 - 24042041
Alignment:
Q  7 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 67  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||    
T  24041980 tcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 24042041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 24509277 - 24509185
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaa 100  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  24509277 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca-taaaaaaaatcactttaatttaccaaa 24509185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 52751375 - 52751290
Alignment:
Q  18 atcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaa 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  52751375 atcaaatctataaacaaaatcaatttcataactcaatcaacaaccaatttgttcactaaaaaaaagcactttaatttaccaaacaa 52751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 50124416 - 50124321
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaatcagtttaatttaccaaacaacaa 106  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  50124416 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa----caatttgttcactaaaaaaaatcactttaatttaccaaacaacaa 50124321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 24509142 - 24509068
Alignment:
Q  137 acaacaattgctatgcttctctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaa 211  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  24509142 acaacaactgctatgcttctctaaagatatcaataaactaataccttcaccttataactactcatccaattgtaa 24509068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 29021826 - 29021890
Alignment:
Q  18 atcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttcactaaagaaaa 82  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29021826 atcaaatctataaacaaaatcaatttcataactcaatcaacaaccaatttgttcactaaaaaaaa 29021890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 52750392 - 52750452
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52750392 tcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaattt 52750452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 31697356 - 31697416
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  31697356 tcatcatcttcatcaaatctataaacataatcaatttcatatctcaatcaataaccaattt 31697416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 47112331 - 47112397
Alignment:
Q  6 ttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  47112331 ttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 47112397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 52751137 - 52751084
Alignment:
Q  156 tctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgta 210  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  52751137 tctaaagatatcaatgaattaatatcctcaccttat-actactcatccaatcgta 52751084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 36142350 - 36142413
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| || ||||||    
T  36142350 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataatcaattt 36142413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 968164 - 968213
Alignment:
Q  18 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||| |||||||||||||||||||||| || |||||| |||||||||    
T  968164 atcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 968215 - 968264
Alignment:
Q  18 atcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||||| |||||||||||||||||||||| || |||||| |||||||||    
T  968215 atcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968264  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 968968 - 968917
Alignment:
Q  21 aaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    |||||||||||||||| |||||||||| |||||||||  |||||||| ||||    
T  968968 aaatctataaacataaacaatttcatatctcaatcaatcaccaattttttca 968917  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 24508445 - 24508506
Alignment:
Q  18 atcaaatctataaacata--atcaatttcataactcaatcaacaaccaatttgttcactaaa 77  Q
    ||||||||||||||||||  ||| |||||||||||||| ||| ||||||||| |||| ||||    
T  24508445 atcaaatctataaacatataatctatttcataactcaaccaataaccaattttttcattaaa 24508506  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 10708372 - 10708432
Alignment:
Q  7 tcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10708372 tcataatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaattt 10708432  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 12602406 - 12602345
Alignment:
Q  7 tcattatctttatcaaatctataaacat-aatcaatttcataactcaatcaacaaccaattt 67  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  12602406 tcattatcttcatcaaatctataaacattaatcaatttcatatctcaatcaataaccaattt 12602345  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 20685867 - 20685935
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  20685867 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 20685935  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 40468916 - 40468848
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  40468916 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 40468848  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 3093384 - 3093438
Alignment:
Q  12 atctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 67  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  3093384 atcttcatcaaatctataaacataat-aatttcataactcaatcaataaccaattt 3093438  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 8029814 - 8029762
Alignment:
Q  20 caaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  8029814 caaatatataaacataatcaatttcataacttaatcaataaccaattttttca 8029762  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 19298391 - 19298323
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| |||||||| |||||||||||||| | |||||| ||||||||| ||||    
T  19298391 ttttcatcatcttcaacaaatatataaacaaaatcaatttcataatttaatcaataaccaattttttca 19298323  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 28189683 - 28189751
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| |  |||| ||||||||||||||||||||||||| |||||| || |||||| ||||    
T  28189683 ttttcatcatcttcaataaatatataaacataatcaatttcataacttaatcaataatcaattttttca 28189751  T

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Target: scaffold0202 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 22029 - 21961
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  22029 ttttcatcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttca 21961  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 13462342 - 13462410
Alignment:
Q  4 ttttcattatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaatttgttca 72  Q
    ||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  13462342 ttttcatcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttca 13462410  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9319159 - 9319119
Alignment:
Q  1 tctttttcattatctttatcaaatctataaacataatcaat 41  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  9319159 tctttttcatcatcttcatcaaatctataaacataatcaat 9319119  T

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