View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_26 (Length: 404)
Name: NF13926_low_26
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 174 - 386
Target Start/End: Complemental strand, 15134252 - 15134046
Alignment:
| Q |
174 |
cgaacttgtatattgtggtaatatgctggaaaatgcaacagaagcaatttaaaaccttggttcaaattgtatttggagtatgtgaaccagcaatgtaata |
273 |
Q |
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| T |
15134252 |
cgaacttgtatattgtggtaatatgctggaaaatgcaacagaagcaatttaaaaccttggttcaaattgtatttggagtatgtgtgccaacaatgtaata |
15134153 |
T |
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| Q |
274 |
agagagtgatgagttactagtttctgaaaattggtatacaggttttgcggtttgtattaagacatttgtatgtatgttggcttcatttaacttggaagtg |
373 |
Q |
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| T |
15134152 |
agatagtgatgagttactagtttatgaaaattggtatacaggttttgtggtttgtattatgaaatttgtatatatg------aaatttaacttggaagta |
15134059 |
T |
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| Q |
374 |
ggggacaaaaaat |
386 |
Q |
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| T |
15134058 |
ggggacaaaaaat |
15134046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 15134364 - 15134250
Alignment:
| Q |
16 |
atggagattctgttactgttatagtaaagataaaattaaataaagtt---gatgtttcttgtgtatt--tataagtgtgtgttgaattggtcaattcata |
110 |
Q |
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| T |
15134364 |
atggagattctgttactgttagagtaaagataaaattaaataaagttgatgatgtttcttgtatatttatataagtgtgtgttgaattggtcaattcata |
15134265 |
T |
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| Q |
111 |
atagtttgagttcga |
125 |
Q |
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| T |
15134264 |
atagtttgagttcga |
15134250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 22892359 - 22892397
Alignment:
| Q |
133 |
gttcaaatcatggttttaaattgcggtcgcagttacact |
171 |
Q |
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| T |
22892359 |
gttcatatcatggttttaaattgcggtcgcggttacact |
22892397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 5939790 - 5939755
Alignment:
| Q |
138 |
aatcatggttttaaattgcggtcgcagttacactgc |
173 |
Q |
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| T |
5939790 |
aatcatggttttaaattgcggtcgcggttacactgc |
5939755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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