View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_29 (Length: 369)
Name: NF13926_low_29
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 44140219 - 44139870
Alignment:
| Q |
17 |
atgtacagccaaaagtaatgtcacctccagatacattatcaaaagcaaaggtaattttgactttgcattagctactcattagcataacgtatttgatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140219 |
atgtacagccaaaagtaatgtcacctccagatacattatcaaaagcaaaggtaattttgactttgcattagctactcattagcataacgtatttgatgat |
44140120 |
T |
|
| Q |
117 |
gaagataaatacaatgcagtattttttgtgaaattatgtagtttaagcaaggaaggagaaaagtaggaaaaatagtgattgtcagtgtagtagatgaaaa |
216 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140119 |
gacgataaatacaatacagtattttttgtgaaattatgtagtttaagaaaggaaggagaaaagtaggaaaaatagtgattgtcagtgtagtagatgaaaa |
44140020 |
T |
|
| Q |
217 |
taatgatcaaaatgtgttttttaaattataaataatcacgaattagtttctactttatataatatttttaaaaagaatcatttttcatacgatgtgtaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140019 |
taatgatcaaaatgtgttttttaaattataaataatcacgaattagtttctactttatataatatttttaaaaagaatcatttttcatacgatgtgtaaa |
44139920 |
T |
|
| Q |
317 |
ttttcttttttaatctgaatcaaatgagtccgaaaagtgtagaataatct |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
44139919 |
ttttcttttttaatctgaatcaaatgagtccgaaaagtttagaattatct |
44139870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 50060799 - 50060449
Alignment:
| Q |
17 |
atgtacagccaaaagtaatgtcacctccagatacattatcaaaagcaaaggtaattttgactttgcattagctactcattagcataacgtatttgatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50060799 |
atgtacagccaaaagtaatgtcacctccagatacattatcaaaagcaaaggtaattttgactttgcattagctactcattagcataacgtatttgatgat |
50060700 |
T |
|
| Q |
117 |
gaagataaatacaatgcagtattttttgtgaaattatgtagtttaagcaaggaaggagaaaagtaggaaaaatagtgattgtcagtgtagtagatgaaa- |
215 |
Q |
| |
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|| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50060699 |
gacgataaatacaatacagtattttttgtgaaattatgtagtttaagtaaggaaggagaaaagtaggaaaaatagtgattgtcagtgtagtagatgaaag |
50060600 |
T |
|
| Q |
216 |
ataatgatcaaaatgtgttttttaaattataaataatcacgaattagtttctactttatataatatttttaaaaagaatcatttttcatacgatgtgtaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50060599 |
ataatgatcaaaatgtgttttttaaattataaataatcacgaattagtttctactttatataatatttttaaaaagaatcatttttcatacgatgtgtaa |
50060500 |
T |
|
| Q |
316 |
attttcttttttaatctgaatcaaatgagtccgaaaagtgtagaataatct |
366 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
50060499 |
attttcttttttaatctgaatcaaatgagtccgaaaagtttagaattatct |
50060449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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