View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_3 (Length: 730)
Name: NF13926_low_3
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 678; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 13 - 714
Target Start/End: Original strand, 43014997 - 43015698
Alignment:
| Q |
13 |
caaaggcatatacaacaggaacacgaaagaggagaaagattcaaaccgaagagtgtgacttacaaggaagtacaggaggagaaacaagatggcacaaaac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43014997 |
caaaggcatatacaacaggaacacgaaagaggagaaagattcaaaccgaagagtgtgacttacaaggaagtacaggaggagaaacaagatggcacaaaac |
43015096 |
T |
|
| Q |
113 |
tggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43015097 |
tggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaacttcggaaagaatcgaaaacccgagaag |
43015196 |
T |
|
| Q |
213 |
acgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagccaagac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015197 |
acgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagccaagac |
43015296 |
T |
|
| Q |
313 |
agtgtaattggtctgataataatcaaagaataattagtgcaacaacaacaaccggtgaaggaagtggtggagaacctaattataatatcaatggaagaag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015297 |
agtgtaattggtctgataataatcaaagaataattagtgcaacaacaacaactggtgaaggaagtggtggagaacctaattataatatcaatggaagaag |
43015396 |
T |
|
| Q |
413 |
agatagtggaagtggaagttcttcttctaaggaaattgttactcagattcatagagatgaaatgtctgctgttgttggtgtccctagtcctttaacaagc |
512 |
Q |
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| T |
43015397 |
agatagtggaagtggaagttcttcttctaaggaaattgttactcagattcatagagatgaaatgtctgctgttgttggtgtccctagtcctttaacaagc |
43015496 |
T |
|
| Q |
513 |
ttcacaaatgctttggatattcaacaccttaaatctgatcattttggcttcatcccatttcgaaaaagctatgatgaagtaagttacatatattatacag |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015497 |
ttcacaaatgctttggatattcaacaccttaaatctgatcattttggcttcatcccatttcgaaaaagctatgatgaagtaagttacatatattatacag |
43015596 |
T |
|
| Q |
613 |
taagacacttatgattgaagatatgtctagtgtttgacacatgttcatgtctgacaccgacatatatagttacattcaaccactttcattttttcaaatt |
712 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |
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| T |
43015597 |
taagacacttctgattgaagatatgtctagtgtttgacacatgttcatgtctgacaccgacatatatagttacaatcaaccatttttattttttcaaatt |
43015696 |
T |
|
| Q |
713 |
ac |
714 |
Q |
| |
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|| |
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|
| T |
43015697 |
ac |
43015698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 288
Target Start/End: Complemental strand, 28948919 - 28948724
Alignment:
| Q |
93 |
gaaacaagatggcacaaaactggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaactttggaa |
192 |
Q |
| |
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|||||||||||||||||||| || || || ||||| ||||| || ||||| ||||||| |||||| || || || ||||||||||||| ||||| |
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| T |
28948919 |
gaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaa |
28948820 |
T |
|
| Q |
193 |
agaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
288 |
Q |
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| | || || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || || | ||||||||||||| |
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| T |
28948819 |
ggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
28948724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 174 - 313
Target Start/End: Original strand, 4235754 - 4235893
Alignment:
| Q |
174 |
ctctacaccaact-ttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagag |
272 |
Q |
| |
|
||||||||||||| ||| ||||| | ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| | ||| ||||| |
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| T |
4235754 |
ctctacaccaactattgcaaaga-tggaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaa |
4235852 |
T |
|
| Q |
273 |
cttgttgtttcaaagatattttatcagacacagccaagaca |
313 |
Q |
| |
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| |||| ||||||||| || || ||||||||||| ||||| |
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| T |
4235853 |
ttcgttgcttcaaagatcttctaccagacacagcctagaca |
4235893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 38887028 - 38887137
Alignment:
| Q |
159 |
aagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaag |
258 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||| | |||| || ||||| || |||||||| ||||| ||||||||||||||| | ||||||| | |
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| T |
38887028 |
aagaaaattcttgtgctttacactaactacagaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagagg |
38887127 |
T |
|
| Q |
259 |
agaaagaagg |
268 |
Q |
| |
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|||||||||| |
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| T |
38887128 |
agaaagaagg |
38887137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 30505860 - 30505981
Alignment:
| Q |
149 |
aaaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaa |
248 |
Q |
| |
|
|||||||| ||| ||||||||||| || ||||| |||| |||||| | |||| || ||||| || ||||||||||||||||| || |||||||| |
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| T |
30505860 |
aaaaggttacaaaaaaattcttgtactttacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagt |
30505959 |
T |
|
| Q |
249 |
catgaagaagagaaagaaggag |
270 |
Q |
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||||||||||||||||||||| |
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| T |
30505960 |
gatgaagaagagaaagaaggag |
30505981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 304
Target Start/End: Complemental strand, 34830007 - 34829853
Alignment:
| Q |
150 |
aaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaac |
249 |
Q |
| |
|
||||||| |||||| || || || ||||||||||||| ||||| | | || || |||||||| ||||||||||||||||||||||| ||||| |
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| T |
34830007 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
34829908 |
T |
|
| Q |
250 |
atgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacaca |
304 |
Q |
| |
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|||||||||||||||| || || | |||||||||||| | ||||| || ||||| |
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|
| T |
34829907 |
atgaagaagagaaagatggtgaattagttgtttcaaaggtgttttaccaaacaca |
34829853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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