View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13926_low_30 (Length: 368)
Name: NF13926_low_30
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 21216573 - 21216229
Alignment:
| Q |
7 |
agggagatgtggtgtataaaattgatttggagaaagcttatcatcatgtgagctggacnnnnnnnnatagaactgtcttcaataatttggttttccatct |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||| |||||||||||||| |||||||||| |
|
|
| T |
21216573 |
agggagatgtggtgtataaaattgatttggagaaagcttatgatcatgtgagctgaactttttt--acggaactatcttcaataatttgattttccatct |
21216476 |
T |
|
| Q |
107 |
attactattgatttaattatgcattgtgagactgtttcaagtctctcactcattttgaatggcacaaggttacttgcttttactcctactcgtggtcaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21216475 |
attactattgatttaattatgcattgtgagactgtttcaagtctctcactcattttgaatggcacaaggttacttgcttttactcctactcgtggccaac |
21216376 |
T |
|
| Q |
207 |
gttaaggggatcctctcttccctaatctttttgtaaggagtaatttataaggagtttttgtcccatgatagtttgaaggcagtgaagttgaatcattgga |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21216375 |
gttaaggggatcctctctcgcctaatcttttt-------gtaatttataaggagtttttgtcccatgatattttgaaggcagtgaagttgaatcattgga |
21216283 |
T |
|
| Q |
307 |
agtcggtgaacatatcttgcaatggattgactctatcctatttatttttgatga |
360 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
21216282 |
agtcggtgaacatatctcgcaatgggctgactctatcccatttattttttatga |
21216229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 7406872 - 7406969
Alignment:
| Q |
257 |
ggagtttttgtcccatgatagtttgaaggcagtgaagttgaatcattggaagtcggtgaacatatcttgcaatggattgactctatcctatttatttt |
354 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||| || |||| | ||||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
7406872 |
ggagtttttgtcccatgatattttgaaggcagtggagttgaatcgttagaaggcaatgaacatatcttgcaatgggacgactctatcccacttatttt |
7406969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 15404180 - 15404117
Alignment:
| Q |
292 |
agttgaatcattggaagtcggtgaacatatcttgcaatggattgactctatcctatttattttt |
355 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| || ||||||| |||||||||| |
|
|
| T |
15404180 |
agttgaatcattggaagtcggtgagcatatctcacaatgggccgattctatcccatttattttt |
15404117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University