View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_35 (Length: 334)
Name: NF13926_low_35
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 28309576 - 28309271
Alignment:
| Q |
19 |
gtttttcacgtaccaactactatatataccttagttgtgtttccatgcattattcacacttttatttcatcattaacaacacaaacatgactattaatac |
118 |
Q |
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| T |
28309576 |
gtttttcacgtaccaactactatatataccttagttgtgtttccatgcattattcacacttttatttcatcattaacaacacaaacatgactattaatgc |
28309477 |
T |
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| Q |
119 |
tattccaaaactctttgcaaccaaaaactctatttctctttcaatagtaatctttatgtatttactcattcttgttgccaatgtaaaatccgactcttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28309476 |
tattccaaaactctttgcaaccaaaaactctatttctctttcaatagtaatctttatgtatttactcattcttgttgccaatgtaaaatccgactcttcc |
28309377 |
T |
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| Q |
219 |
ttcaatttccctaattttcaacccgaagctttnnnnnnnctcggtttcgcaaacgacgccacattaaaaaatggagtgatacaattaactaaaaaagatg |
318 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28309376 |
ttcaatttccctaattttcaacccgaagctttaaaaaaactcggtttcgcaaacgacgccacattaaaaaatggagtaatacaattaactaaaaaagatg |
28309277 |
T |
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| Q |
319 |
cctatg |
324 |
Q |
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| |||| |
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| T |
28309276 |
cttatg |
28309271 |
T |
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