View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_36 (Length: 334)
Name: NF13926_low_36
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 39529110 - 39529423
Alignment:
| Q |
19 |
caattatcgcctgaaatgtagacgattaacaaatttgtcaagatcctagca-gtaggaaagggggaaaagaaaatgcaaaagttgaaaccgaaacaacat |
117 |
Q |
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| T |
39529110 |
caattgtcgcctgaaatgtagacgattaacaaatttgtcaagatcctagcaagtaggaaagggggaaaagaaaatgcaaaagttgaaacctaaacaacat |
39529209 |
T |
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| Q |
118 |
gacaaagaagatatatttctattttaagtaaccttgcatgataagttggtaacagacataaacaaggagcattacaaactaagcatccttaacgtatcgc |
217 |
Q |
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| T |
39529210 |
ggcaaagaagatatgtttctattttaagtaaccttgcatgataagttggtaacagacataaacaaggagcattacaaactaagtatccttaacgtatcgc |
39529309 |
T |
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| Q |
218 |
atccgatactcatatcttgtttgtgcttcatcgacaaaaatggcaaaaatgtcataaatatgatcccttgaaaataattcctacaattgctaataaaagc |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39529310 |
atccgatactcatatcttgtttgtgcttcgtcgacaaaaatggcaaaaatgtcataaatatgatcccttgaaaataattcctacaattgctaataaaagc |
39529409 |
T |
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| Q |
318 |
tcttcttctcactc |
331 |
Q |
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|||||||||||||| |
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| T |
39529410 |
tcttcttctcactc |
39529423 |
T |
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