View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_41 (Length: 316)

Name: NF13926_low_41
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_41
NF13926_low_41
[»] chr8 (1 HSPs)
chr8 (9-298)||(29853883-29854172)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 29854172 - 29853883
Alignment:
Q  9 gattatactaatattaaacatgaaagcttctctgaaaatgaggctatcaaagaacatcatgccagtgacagtgaccttgaaacaaatgcagaagaagggt 108  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  29854172 gattacactaatatcaaacatgaaagcttctctgaaaatgaggctatcaaagaacatcatacgaatgacagtgaccttgaaacaaatgcagaagaagggt 29854073  T
Q  109 tcaaatgcagtgttctttgcatgtttttacggggattcggcaaagcaaagtcagctaaaactaaaaaagaaggatcagaaatggaaggtacgatatcaag 208  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29854072 tcaaatgcagtgttctttgcatgtttttgccgggattcggcaaagcaaagtcagctaaaactaaaaaagaaggatcagaaatggaaggtacgatatcaag 29853973  T
Q  209 gacagtttctttagaaaagtttgaatgtggttcttgggcttcttctgcactattcaatgacattgaaacagacaacacaagttcctattt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29853972 gacagtttctttagaaaagtttgaatgtggttcttgggcttcttctgcactatttaatgacattgaaacagacaacacaagttcctattt 29853883  T

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