View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_43 (Length: 308)
Name: NF13926_low_43
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 41280524 - 41280816
Alignment:
| Q |
1 |
atttagctttgaatgaacactgtatctcataatggaaaatgatcaaaataaatattgcaactttatgctcaaatgacgtgtcaatattggtaacctccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280524 |
atttagctttgaatgaacactgtatctcataatggaaaatgatcaaaataaatattgcaactttatgctcaaatgacgtgtcaatattggtaacctccaa |
41280623 |
T |
|
| Q |
101 |
acaaattcatttaatttagaaaaatgctaacaattgtttctaggtagtatttgttaaagaaggcnnnnnnnntcgctaaaaataacacttttaggctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41280624 |
acaaattcatttaatttagaaaaatgctaacaattgtttctaggtagtatttgttaaagaaggcaaaaaaaatcgctaaaaataacacttttaggctttt |
41280723 |
T |
|
| Q |
201 |
taaaaattgattgtacaatttttaatgaaattgatttcttaacaagtgtgaagtgttcttaatacacctgttaacatgatcatttaaatcatg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
41280724 |
taaaaattgattgtacaatttttaatgaaattgatttcttaacaagtgtgaagtgttcttaatacacttattaacatgatcatttaaatcatg |
41280816 |
T |
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