View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_44 (Length: 266)
Name: NF13926_low_44
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 31183773 - 31184008
Alignment:
| Q |
13 |
aatatgctttcaggaaccattcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccag |
112 |
Q |
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| T |
31183773 |
aatatgctttcaggaaccattcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccag |
31183872 |
T |
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| Q |
113 |
cttttcttcttgctccgtttgaatcattaaaaaataacaaaggcttatgcggaaatatcacaggtttggttccttgtccaacaaacaatagtcgaaagag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31183873 |
cttttcttcttgctccgtttgaatcattaaaaaataacaaaggcttatgcggaaatatcacaggtttggttccttgtccaacaaacaatagtcgaaagag |
31183972 |
T |
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| Q |
213 |
aaaaaatgtcattcgatcggtattcattgctttagg |
248 |
Q |
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| T |
31183973 |
aaaaaatgtcattcgatcggtattcattgctttagg |
31184008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 31058249 - 31058484
Alignment:
| Q |
13 |
aatatgctttcaggaaccattcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccag |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | |
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| T |
31058249 |
aatatgctttcaggaaccattcctcaaaattttggaaggaatttggtttttgttaatatatcagacaaccagttagaaggtccactaccaaaaattccgg |
31058348 |
T |
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| Q |
113 |
cttttcttcttgctccgtttgaatcattaaaaaataacaaaggcttatgcggaaatatcacaggtttggttccttgtccaacaaacaatagtcgaaagag |
212 |
Q |
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| T |
31058349 |
cttttcttagtgcttcatttgaatcattaaaaaataacaatcacttatgcggaaatatcagaggtttggatccttgtgctacaagccatagtcgaaagag |
31058448 |
T |
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| Q |
213 |
aaaaaatgtcattcgatcggtattcattgctttagg |
248 |
Q |
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| T |
31058449 |
aaaaaatgtccttcgaccggtattcattgctttagg |
31058484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 31102684 - 31102925
Alignment:
| Q |
13 |
aatatgctttcaggaaccattcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccag |
112 |
Q |
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|||||||||||||||||||||||| || |||| | || ||||| ||||||||| |||||||||||||||||||| || |||||||| ||| ||||| |
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| T |
31102684 |
aatatgctttcaggaaccattccttcaacttttagtatgagtttggattttgttaacatatcagacaaccagttagatggtccacttccagaaaatccag |
31102783 |
T |
|
| Q |
113 |
cttttcttcttgctccgtttgaatcattaaaaaataacaaaggcttatgcggaaatatcacaggtttggttccttgtccaaca------aacaatagtcg |
206 |
Q |
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| T |
31102784 |
cttttcttcgtgctccgtttgaatcattcaaaaataacaaaggcttatgtggaaatatcacaggtttggttccgtgtgcaacaagccagatccatagtag |
31102883 |
T |
|
| Q |
207 |
aaagagaaaaaatgtcattcgatcggtattcattgctttagg |
248 |
Q |
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|||||| |||||| || ||| ||||||||| ||||||||||| |
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| T |
31102884 |
aaagagcaaaaatatccttcaatcggtatttattgctttagg |
31102925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 31140099 - 31140284
Alignment:
| Q |
54 |
tttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttcttgctccgtttgaatcattaaaaaataacaaa |
153 |
Q |
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||||| ||||||||| |||||| |||| ||||||||||| || ||||| | | |||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
31140099 |
tttggattttgttaacatatcaaacaatcagttagaagggccgcttccggacaatccagcttttcttcatgctccgtttgaatcattcaaaaataacaaa |
31140198 |
T |
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| Q |
154 |
ggcttatgcggaaatatcacaggtttggttccttgtccaacaaacaatagtcgaaagagaaaaaatgtcattcgatcggtattcattgctttagg |
248 |
Q |
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| T |
31140199 |
gacttgtgtggaaatttcaaaggcttggatccttgtgga---------agtcgaaagagcaaaaatgtcctccgatcggtattaattgctttagg |
31140284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 31153117 - 31153252
Alignment:
| Q |
54 |
tttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttcttgctccgtttgaatcattaaaaaataacaaa |
153 |
Q |
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||||| ||||||||| ||||||||||| ||||||||||| | ||||| | | |||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
31153117 |
tttggattttgttaacatatcagacaatcagttagaagggcggcttccggacaatccagcttttcttcatgctccgtttgaatcattcaaaaataacaaa |
31153216 |
T |
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| Q |
154 |
ggcttatgcggaaatatcacaggtttggttccttgt |
189 |
Q |
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| ||| || |||||| ||| ||| |||| ||||||| |
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| T |
31153217 |
gacttgtgtggaaatttcaaaggcttggatccttgt |
31153252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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