View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_45 (Length: 266)
Name: NF13926_low_45
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 18852670 - 18852904
Alignment:
| Q |
11 |
gaagcaaatctaggtaaactcttaggtagagtttgccacccacacaaagcnnnnnnnnnnnnnncagtgatttaacacaggattgccataaactctatta |
110 |
Q |
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| T |
18852670 |
gaagcaaatctaggtaaactcttaggtagagtttgccacccgcacaaagcaaaaaaaaaa----cagtgatttaacacaggattgccataaactctatta |
18852765 |
T |
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| Q |
111 |
aatgagaaagacgtgaaattatacgagagcatcatagaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacat |
210 |
Q |
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| T |
18852766 |
aatgagaaagacatgaaattatacgagagcatcatagaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacat |
18852865 |
T |
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| Q |
211 |
cctttaattctagatcaaatctggtatctggatggtccg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
18852866 |
tctttaattctagatcaaatctggtatctggatggtccg |
18852904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 18841671 - 18841845
Alignment:
| Q |
75 |
cagtgatttaacacaggattgccataaactctattaaatgagaaagacgtgaaattatacgagagcatcatagaaactaccatatactacaaaccacaaa |
174 |
Q |
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| T |
18841671 |
cagtgattcaacacaggattaccgtaagctatatcaaatgagaaagacatgaaattatacgagaggatcatagaaactaccatatgctacaaaccacaaa |
18841770 |
T |
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| Q |
175 |
agtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctggatggtccg |
249 |
Q |
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| T |
18841771 |
agtactatggaggaggtgtaataaagatccttacatcttttaattctagatcaaatctggtatctggatggtccg |
18841845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 50013977 - 50014085
Alignment:
| Q |
141 |
atcatagaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctg |
240 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
50013977 |
atcatagaaactaccatatgctacaaaccacaaaagtaatatggaggaggtgaaataaagatcattacatcttttaattctagatcaaatctggtatctg |
50014076 |
T |
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| Q |
241 |
gatggtccg |
249 |
Q |
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| T |
50014077 |
gacggtccg |
50014085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 18841541 - 18841577
Alignment:
| Q |
11 |
gaagcaaatctaggtaaactcttaggtagagtttgcc |
47 |
Q |
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| T |
18841541 |
gaagcaaatctaggtaaactcttaggtagagtttgcc |
18841577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 51298930 - 51299069
Alignment:
| Q |
110 |
aaatgagaaagacgtgaaattatacgagagcatcatagaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattaca |
209 |
Q |
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||||||||||||| |||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
51298930 |
aaatgagaaagacatgaaattatatgagaggatcatagaaactacgatatgttacaaaccacaaaagtgctatggaggaggtaaaataaagatcattaca |
51299029 |
T |
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| Q |
210 |
tcctttaattctagatcaaatctggtatctggatggtccg |
249 |
Q |
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|| |||||||||||||| ||||||||||||||| |||||| |
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| T |
51299030 |
tcttttaattctagatcgaatctggtatctggacggtccg |
51299069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 44111049 - 44111157
Alignment:
| Q |
141 |
atcatagaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctg |
240 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
44111049 |
atcatagaaactaccatatgctacaaaccacaaaagtaatatggaggaggtgaaataaagatcattacatcttttaattctagatcaaatctggtatctg |
44111148 |
T |
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| Q |
241 |
gatggtccg |
249 |
Q |
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|| |||||| |
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| T |
44111149 |
gacggtccg |
44111157 |
T |
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