View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_46 (Length: 266)
Name: NF13926_low_46
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_46 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 43169763 - 43169976
Alignment:
| Q |
19 |
tcactttgatgattagtctcatagtggtttcaaagaacataagacatgagataatttggagcgctagagatcctaattagtgcggattagcaacnnnnnn |
118 |
Q |
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| T |
43169763 |
tcactttgatgattagtctcatagtggtttcaaaggacataagacgtgagataatttggagcgctagagatcctaattagggtggattagaaaaagaaaa |
43169862 |
T |
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| Q |
119 |
nnnca---ctcatttaaaaatgcaaaacaactcatgctcttaattaccattaaaaaccaggttttgcaaaataacaacctctgaaattgatctataactg |
215 |
Q |
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| T |
43169863 |
aaaaaaaactcatttaaaaatgcaaaacaactcatgctattaattaccattaaaaaccaggtttttcaaaataacaacctctgaaattgatctataactg |
43169962 |
T |
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| Q |
216 |
ggatcaagagtgtg |
229 |
Q |
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| T |
43169963 |
ggatcaagagtgtg |
43169976 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 25546721 - 25546768
Alignment:
| Q |
219 |
tcaagagtgtgagttcgcgaagcattgaaaactcattaggtatgtttc |
266 |
Q |
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| T |
25546721 |
tcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttc |
25546768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 39227522 - 39227569
Alignment:
| Q |
219 |
tcaagagtgtgagttcgcgaagcattgaaaactcattaggtatgtttc |
266 |
Q |
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| T |
39227522 |
tcaagagtgtgagttcgcgaagatttgaaaactcattaggtatgtttc |
39227569 |
T |
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