View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_5 (Length: 592)

Name: NF13926_low_5
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_5
NF13926_low_5
[»] chr2 (2 HSPs)
chr2 (1-576)||(43852659-43853239)
chr2 (474-538)||(41382272-41382336)
[»] scaffold0531 (1 HSPs)
scaffold0531 (465-556)||(3378-3469)
[»] chr6 (4 HSPs)
chr6 (474-556)||(7979423-7979505)
chr6 (498-556)||(8031896-8031954)
chr6 (498-538)||(7971873-7971913)
chr6 (498-538)||(8041775-8041815)
[»] chr8 (1 HSPs)
chr8 (474-557)||(34409203-34409286)
[»] chr3 (1 HSPs)
chr3 (487-576)||(38827375-38827464)
[»] chr7 (1 HSPs)
chr7 (496-556)||(14198820-14198880)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 43852659 - 43853239
Alignment:
Q  1 ttctcattgaaataaagtgaaaacaacttgaaataagatcatatatattcttaatctcttcttgnnnnnnnnn-----aaaaaagaacaaggaagatgaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||               ||||||||||| ||||||||||    
T  43852659 ttctcattgaaataaagtgaaaacaacttgaaataagatcatatatattcttaatctcttttttttttttttattttaaaaaaagaacatggaagatgaa 43852758  T
Q  96 agtttttattagtcgaagtgacactaattaatgacaattatataacctccttccagggatttaaatttcgtctcttgagattatattgtgacactattac 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852759 agtttttattagtcgaagtgacactaattaatgacaattatataacctccctccagggatttaaatttcgtctcttgagattatattgtgacactattac 43852858  T
Q  196 ctcccaaatgaattgaatgacgaatcgttcaggagaatctaagtttgattcctggatgaacatttcttagtcaaaacttacttatctcctgaccaaactt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  43852859 ctcccaaatgaattgaatgacgaatcgttcaggagaatctaagtttgattcctggatgaacattttttagtcaaaacttacttatcttctgaccaaactt 43852958  T
Q  296 tggattatcaggacctctttcccattaggaccgaagggttaacacaaaaaataattgtgaaactattaccactaatttgacatctcaaggacgtttaaat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43852959 tggattatcaggacctctttcccattaggaccgaagggttaacacaaaaaataattgtgaaactattaccactaatttgacatctcaaggacgtttaaat 43853058  T
Q  396 cacaatgaaacataagtttgtttatgttttacaatgtcgaattgcaggggtcctggtgtggtgattctaatcttatcttggataatcaccctctacactc 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43853059 cacaatgaaacataagtttgtttatgttttacaatgtcgaattgcaggggtcctggtgtggtgattctaatcttatcatggataatcaccctctacactc 43853158  T
Q  496 tatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttg 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43853159 tatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttg 43853239  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 538
Target Start/End: Complemental strand, 41382336 - 41382272
Alignment:
Q  474 tggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacg 538  Q
    ||||| ||||| |||||||| || |||||||||||||| |||||||| |||||||| ||||||||    
T  41382336 tggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacg 41382272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 465 - 556
Target Start/End: Complemental strand, 3469 - 3378
Alignment:
Q  465 atcttatcttggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga 556  Q
    |||||||| ||||| ||||| || || ||  | |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  3469 atcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatga 3378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 556
Target Start/End: Complemental strand, 7979505 - 7979423
Alignment:
Q  474 tggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga 556  Q
    ||||| |||||  ||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||    
T  7979505 tggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatga 7979423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 498 - 556
Target Start/End: Original strand, 8031896 - 8031954
Alignment:
Q  498 tggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga 556  Q
    |||||||||||||| |||||||||||| |||| |||||||| |||||||| ||||||||    
T  8031896 tggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatga 8031954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 7971913 - 7971873
Alignment:
Q  498 tggcaaatggttgaaatgcatgaaatggttccaggaaaacg 538  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  7971913 tggcaaatggttgagatgcatgagatggttccaggaaaacg 7971873  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 8041775 - 8041815
Alignment:
Q  498 tggcaaatggttgaaatgcatgaaatggttccaggaaaacg 538  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  8041775 tggcaaatggttgagatgcatgagatggttccaggaaaacg 8041815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 474 - 557
Target Start/End: Original strand, 34409203 - 34409286
Alignment:
Q  474 tggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag 557  Q
    |||||||||||  | | |||||||||||||||||||||||||||||||||||| ||||||| | | ||||| ||||| ||||||    
T  34409203 tggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag 34409286  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 576
Target Start/End: Complemental strand, 38827464 - 38827375
Alignment:
Q  487 tctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttg 576  Q
    |||||||| |||||||||||||||| ||||||||||| ||||| |||||  | || |||||||| ||||||||||| || ||||| ||||    
T  38827464 tctacactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaagaagcctttg 38827375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 14198880 - 14198820
Alignment:
Q  496 tatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga 556  Q
    |||||||||||||||| |||||||||||||| || || ||||| || ||||| || |||||    
T  14198880 tatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatga 14198820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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