View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_54 (Length: 248)

Name: NF13926_low_54
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_54
NF13926_low_54
[»] chr3 (39 HSPs)
chr3 (1-232)||(6265267-6265498)
chr3 (4-198)||(6916711-6916905)
chr3 (4-198)||(6899698-6899892)
chr3 (4-213)||(6141881-6142090)
chr3 (4-203)||(6168496-6168695)
chr3 (4-198)||(6591578-6591772)
chr3 (5-196)||(6882116-6882307)
chr3 (4-198)||(7749612-7749806)
chr3 (4-107)||(6722319-6722422)
chr3 (54-198)||(6244903-6245047)
chr3 (4-112)||(7587543-7587651)
chr3 (54-195)||(13270828-13270969)
chr3 (54-198)||(6258812-6258956)
chr3 (4-115)||(6480235-6480346)
chr3 (4-115)||(6735655-6735766)
chr3 (4-115)||(8471229-8471340)
chr3 (4-66)||(6946983-6947045)
chr3 (4-114)||(8569198-8569308)
chr3 (4-115)||(6449040-6449151)
chr3 (4-113)||(6839157-6839266)
chr3 (4-108)||(6554691-6554795)
chr3 (154-198)||(8589326-8589370)
chr3 (8-115)||(8589394-8589501)
chr3 (153-198)||(6520564-6520609)
chr3 (153-198)||(6735587-6735632)
chr3 (154-198)||(6554826-6554870)
chr3 (154-198)||(6946872-6946916)
chr3 (4-115)||(8454319-8454430)
chr3 (5-115)||(5267724-5267834)
chr3 (4-114)||(6520415-6520525)
chr3 (153-198)||(5280263-5280308)
chr3 (153-198)||(6449186-6449231)
chr3 (153-198)||(6480381-6480426)
chr3 (4-108)||(4389193-4389297)
chr3 (146-198)||(5298328-5298380)
chr3 (154-198)||(6722454-6722498)
chr3 (153-192)||(6795001-6795040)
chr3 (153-198)||(8454239-8454284)
chr3 (4-116)||(5298398-5298510)
[»] chr7 (1 HSPs)
chr7 (5-116)||(6573549-6573660)
[»] scaffold0425 (2 HSPs)
scaffold0425 (4-115)||(7730-7841)
scaffold0425 (153-198)||(7864-7909)
[»] chr1 (1 HSPs)
chr1 (4-178)||(35140597-35140771)
[»] chr4 (1 HSPs)
chr4 (157-198)||(25242529-25242570)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6265498 - 6265267
Alignment:
Q  1 caggctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||| |||    
T  6265498 caggctttggatggcagaaggtttgttaaattgttgcggaagaaacaaaagcaaagaagagttagggaatgaattcttcgatcaactagtgtcaatgtca 6265399  T
Q  101 tttttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggagagt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6265398 tttttccaacaatcagtattgatgccattatggaccggtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggagagt 6265299  T
Q  201 cccgattgcgaatacgaatagagggtaataac 232  Q
     ||||||||||||||||||||||||| |||||    
T  6265298 tccgattgcgaatacgaatagagggtgataac 6265267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 6916905 - 6916711
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||||  |||||||||| || || ||||| ||| || ||||||||||||||||||||    
T  6916905 gctttggatggcagaaggtttgctgaagtgttgtggaagagacaaaagtgaagaagagttgggtaatgaatttttcaatgatctagtgtcaatatcattt 6916806  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||||| ||||||| | ||||||  |||| |  |||||  ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  6916805 ttccaacgatcagtaattatgccacgatgggcaggtaagcactactttgtcatgcatgatcttgtcaatgatttagcaaaatcagtgtcgggaga 6916711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 6899892 - 6899698
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||| || || ||||||||| |  |||||||||||||| |||||    
T  6899892 gctttggatggcagaaggtttgctgaagtgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttcaacgatctagtgtcaataacattt 6899793  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||| ||||||  | | |||||||||||| |  |||| | |||||| |||||||||||||||||  ||||||||||||||| ||||||||||||    
T  6899792 ttccagcaatcaacaattatgccattatgggctggtaaatactacttcatcatgcatgatcttgtatatgatttagcgaaattagtgtcaggaga 6899698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 6142090 - 6141881
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||||| |||||   || | ||   ||||  |||| |||||||||||| || |||||||||||||||||||||||||||||||||    
T  6142090 gctttggatggcagaaggtttcttgaaccatttcagagttgacagtagcatagaagagttaggtaatgaattcttcgattatctagtgtcaatatcattt 6141991  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggagagtccc 203  Q
    ||||||||||||||| | |||||||||||| |  |||||| |||||| |  ||||||||||||||||||||||||||||||||| || || |||| ||||    
T  6141990 ttccaacaatcagtaattatgccattatggtctggtaagtactacttcactatgcatgatcttgtcaatgatttagcgaaatcattgacaagagaatccc 6141891  T
Q  204 gattgcgaat 213  Q
    | || |||||    
T  6141890 gcttacgaat 6141881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 6168695 - 6168496
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||| |||||||| | || |||||||||| ||||||||   |||||||||| || || |||||||| ||| ||||||||||||| ||||||    
T  6168695 gctttggatggcacaaggtttgctaaagtgttgcggaaaagacaaaaatgaagaagagttgggtaatgaattctttgatcatctagtgtcaatgtcattt 6168596  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggagagtccc 203  Q
    ||||||||||||| | | |||||||||||| |  |||||| ||| || |||||||||||||||| || |||||||||||||||| || ||||||| ||||    
T  6168595 ttccaacaatcagcaattatgccattatgggctggtaagtactatttcatcatgcatgatcttgccagtgatttagcgaaatcattgacaggagaatccc 6168496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 6591578 - 6591772
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||| ||| | || ||||| | |||| |||||||  ||||| |||| || || ||||||||| || |||||||||||||||| |||    
T  6591578 gctttggatggcagaaggcttgctaaagtgttgggaaagacacaaaagtgaagaaaagttgggcaatgaattcttcaatcatctagtgtcaatatcgttt 6591677  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||   |||||||||||| |  | |||  |||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  6591678 ttccaacaatcagtaactatgccattatgggctggcaagcactacttcatcatgcatgatcttgtcaatgatttagcaaaatcagtgtcaggaga 6591772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 6882307 - 6882116
Alignment:
Q  5 ctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttt 104  Q
    |||||||||||||||||||||||||| |||  |  ||||||||||||| || |||||||||| || ||||||||| || || | ||||||||||| ||||    
T  6882307 ctttggatggcagaaggtttgttgaagtgtcacaaaagagacaaaagcgaacaagagttaggtaatgaattcttcaatcatttggtgtcaatatcttttt 6882208  T
Q  105 tccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcagga 196  Q
    |||||||||||||| | |||||||||||| |    || | ||||||  ||||||||||||||||||||||||||||||||||| || |||||    
T  6882207 tccaacaatcagtaattatgccattatgggctgacaaatactacttcgtcatgcatgatcttgtcaatgatttagcgaaatcaatggcagga 6882116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 7749806 - 7749612
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||| ||| | || ||||| |||||||||||||   ||||| |||| || || ||||||||| ||||||||||||||||||| |||    
T  7749806 gctttggatggcagaaggcttgctaaagtgttggggaagagacaaaactgaagaacagttgggtaatgaattcttcaattatctagtgtcaatatcgttt 7749707  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||   ||||| |||||| |  |||| | |||||| |||||| | |||||||||||||||||||| ||||||||||| |||||    
T  7749706 ttccaacaatcagtaactatgcctttatgggctggtaaatactacttcatcatgaacgatcttgtcaatgatttagcaaaatcagtgtcgggaga 7749612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 6722319 - 6722422
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||  || ||||||| || || |||||||| ||| ||||||||||||||||||||    
T  6722319 gctttggatgacagaagatttgttgaagtgttgcggaagagacaaaagtgaacaagagttgggtaatgaattctttgatcatctagtgtcaatatcattt 6722418  T
Q  104 ttcc 107  Q
    ||||    
T  6722419 ttcc 6722422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 198
Target Start/End: Complemental strand, 6245047 - 6244903
Alignment:
Q  54 aagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttttccaacaatcagtattgatgccattatggaccagtaagtgctactttat 153  Q
    |||||||||| || ||  |||||||| || ||||||||||||| || |||||||||||||||| | | |||||||| ||| |  |||||| | | || ||    
T  6245047 aagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtacaatttcat 6244948  T
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||    
T  6244947 catgcatgatcttgtccatgatttagcgacatcaatgtcaggaga 6244903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 7587651 - 7587543
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||| || || |||||||| ||| |||||| ||| || ||||||    
T  7587651 gctttggatggcagaaggtttgctgaaatgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttggatgatctagagtccatttcattt 7587552  T
Q  104 ttccaacaa 112  Q
    || ||||||    
T  7587551 tttcaacaa 7587543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 13270828 - 13270969
Alignment:
Q  54 aagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttttccaacaatcagtattgatgccattatggaccagtaagtgctactttat 153  Q
    |||||||||| || ||  |||||||| || ||||||||||||| || |||||||||||||||| | |  ||||||| ||| |  |||||| ||| || ||    
T  13270828 aagaagagttgggtaataaattcttcaatgatctagtgtcaatttcgtttttccaacaatcagcaattgtgccattctgggctggtaagtactatttcat 13270927  T
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcagg 195  Q
    |||||||||||||||| |||||||||||| |||| |||||||    
T  13270928 catgcatgatcttgtccatgatttagcgacatcaatgtcagg 13270969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 198
Target Start/End: Complemental strand, 6258956 - 6258812
Alignment:
Q  54 aagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttttccaacaatcagtattgatgccattatggaccagtaagtgctactttat 153  Q
    |||||||||| || ||  |||||||| || ||||||||||||| || |||||||||| |||||   | |||||||| ||| |  |||||| ||| || ||    
T  6258956 aagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcttttttccaaccatcagcgattatgccattctgggctggtaagtactatttcat 6258857  T
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||||||||||| ||||||||||||||| |||| ||||||||||    
T  6258856 catgcatgatcttatcaatgatttagcgacatcaatgtcaggaga 6258812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 6480235 - 6480346
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||||||||||| |||||||||  | |||||||  |||||||||| || || ||| | |||| | |||| | |||||| ||||||    
T  6480235 gctttggatggcagaaggtttgttgaagtgttgcggatcatacaaaagtgaagaagagtttggtaatgaaattttcggtgatcttgagtcaatttcattt 6480334  T
Q  104 ttccaacaatca 115  Q
    ||||||||||||    
T  6480335 ttccaacaatca 6480346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 6735766 - 6735655
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| |||||||||  |||||||||  |||||||||| || || ||| | |||| | |||| | |||||| ||||||    
T  6735766 gctttggatggcagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggcaatgaaattttcggtgatcttgagtcaatttcattt 6735667  T
Q  104 ttccaacaatca 115  Q
    ||||||||||||    
T  6735666 ttccaacaatca 6735655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 8471340 - 8471229
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||  | |||||||| || || |||||||| ||| |||| | ||| || ||||||    
T  8471340 gctttggatggcagaaggtttgctgaaatgttgcagaagagacaaaagtgaggaagagttgggtaatgaattctttgatgatcttgagtccatttcattt 8471241  T
Q  104 ttccaacaatca 115  Q
     |||||||||||    
T  8471240 ctccaacaatca 8471229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 6947045 - 6946983
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagg 66  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||    
T  6947045 gctttggatggcagaaggtttgttgaagtgttgcagaagagacaaaagtgaagaagagttagg 6946983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 8569198 - 8569308
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||||  |||||||| | || || || ||||||||| |||| | ||| || ||||||    
T  8569198 gctttggatggcagaaggtttgttgaagtgttgcaaaagagacaaaagtgaagaagagctgggtaatgagttcttcgatgatctggagtccatttcattt 8569297  T
Q  104 ttccaacaatc 114  Q
    ||||| |||||    
T  8569298 ttccagcaatc 8569308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 6449040 - 6449151
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||||||  |||||||||| || || ||| | |||  | |||| | |||||| ||||||    
T  6449040 gctttggatggcagaaggtatgttgaagtgttgcggatcagacaaaagtgaagaagagtttggtaatgaaattttctgtgatcttgagtcaatttcattt 6449139  T
Q  104 ttccaacaatca 115  Q
    ||||||||||||    
T  6449140 ttccaacaatca 6449151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 6839157 - 6839266
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| |  |||||||||||||||||  ||||||| || || || |||||| | ||||| |||| ||| || ||||||    
T  6839157 gctttggatggcagaaggtttgctgaaatactgcggaagagacaaaagtgaagaagaattgggaaatgaattcatggattacctagagtccatttcattt 6839256  T
Q  104 ttccaacaat 113  Q
    ||| ||||||    
T  6839257 ttcgaacaat 6839266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 6554691 - 6554795
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||||||||||||||| |||| |||||||||  |||||||||  |||||||||| || || ||| | |||| | |||| | |||||| ||||||    
T  6554691 gctttggatggcagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggtaatgaaattttcggtgatcttgagtcaatttcattt 6554790  T
Q  104 ttcca 108  Q
    |||||    
T  6554791 ttcca 6554795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 8589370 - 8589326
Alignment:
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  8589370 catgcatgatcttgtcaatgatttagcaaaatcagtgtcaggaga 8589326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 8589501 - 8589394
Alignment:
Q  8 tggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttttcc 107  Q
    ||||||||||||||||| ||||| |||||||||  | |||||||  ||||||||||||| || ||| | |||| | |||| | |||||| ||||||||||    
T  8589501 tggatggcagaaggtttattgaagtgttgcggatcacacaaaagtgaagaagagttaggtaatgaaattttcggtgatcttgagtcaatttcatttttcc 8589402  T
Q  108 aacaatca 115  Q
    ||| ||||    
T  8589401 aacgatca 8589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 6520564 - 6520609
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  6520564 tcatgcatgatcttgtcaatgatttagcaaaatcagtgtcaagaga 6520609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 6735632 - 6735587
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||||||||||||| | |||||||||||||||||    
T  6735632 tcatgcatgatcttgtcaatgatttaacaaaatcagtgtcaggaga 6735587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 6554826 - 6554870
Alignment:
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  6554826 catgcatgatcttgtcaatgatttaacaaaatcagtgtcaggaga 6554870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 6946916 - 6946872
Alignment:
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  6946916 catgcatgatcttgtcaatgatttatccaaatcagtgtcaggaga 6946872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 8454430 - 8454319
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||||||||||| |||||||||    ||| |||  |||||||||| || || |||   |||| | |||| |||||||| || |||    
T  8454430 gctttggatggcagaaggtttgttgaagtgttgcggatctaacagaagtgaagaagagtttggtaatgaaagtttcgctgatcttgtgtcaatttctttt 8454331  T
Q  104 ttccaacaatca 115  Q
    ||||||||||||    
T  8454330 ttccaacaatca 8454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 5267834 - 5267724
Alignment:
Q  5 ctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttt 104  Q
    ||||||||||| || |||||| |||| ||  |||||| ||| |||||| |||||||| | || ||  |||| || ||| ||||||||||||| |||||||    
T  5267834 ctttggatggccgacggtttgctgaagtgccgcggaacagaaaaaagcgaagaagagctgggtaatcaattattagatgatctagtgtcaatttcatttt 5267735  T
Q  105 tccaacaatca 115  Q
    |||| ||||||    
T  5267734 tccagcaatca 5267724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 6520415 - 6520525
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||||||||||| |||| ||||   ||||||||  ||||||| || || || ||| | |||| | |||| | |||||| ||||||    
T  6520415 gctttggatggcagaaggtttgttgaagtgttacggattggacaaaagtgaagaagattttggtaatgaaattttcggtgatcttgagtcaatttcattt 6520514  T
Q  104 ttccaacaatc 114  Q
    |||||| ||||    
T  6520515 ttccaaaaatc 6520525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 5280308 - 5280263
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||    
T  5280308 tcatgcatgatcttgtcattgatttagcaagatcagtgtcaggaga 5280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 6449186 - 6449231
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||    
T  6449186 tcatgcatgatcttgtgaatgatttaacaaaatcagtgtcaggaga 6449231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 6480381 - 6480426
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||    
T  6480381 tcatgtataatcttgtcaatgatttagcaaaatcagtgtcaggaga 6480426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 4389193 - 4389297
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||| || || ||||||||||| ||||||||||| ||||||||  |||||||||| || || || || || | | ||||||  ||||| ||||||    
T  4389193 gctttggatagcggatggtttgttgaagtgttgcggaagtgacaaaagtgaagaagagttgggtaatgagttatttgttgatctagaatcaatttcattt 4389292  T
Q  104 ttcca 108  Q
    |||||    
T  4389293 ttcca 4389297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 5298380 - 5298328
Alignment:
Q  146 tactttatcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||| | ||||||||||||||||| |||||||| ||||||||||| |||||    
T  5298380 tactttgttatgcatgatcttgtcaacgatttagcaaaatcagtgtcgggaga 5298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 6722454 - 6722498
Alignment:
Q  154 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||    
T  6722454 catgcatgatcttgttaatgatttagccaattcagtgtcaggaga 6722498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 6795001 - 6795040
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtc 192  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  6795001 tcatgcatgatcttgtcaatgatttggcaaaatcagtgtc 6795040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 8454284 - 8454239
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||||||||||||| | |||||||| || |||||    
T  8454284 tcatgcatgatcttgtcaatgatttaacaaaatcagtatctggaga 8454239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 5298510 - 5298398
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||||||||||||||||||| || ||| |||  || ||||   |||||||||| || || |||||||| ||  ||||||  ||| | ||||||    
T  5298510 gctttggatggcagaaggtttgttgaagtgctgcagaattgataaaactgaagaagagttgggtaatgaattctttgacgatctagaatcagtttcattt 5298411  T
Q  104 ttccaacaatcag 116  Q
    || |||| |||||    
T  5298410 tttcaacgatcag 5298398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 6573549 - 6573660
Alignment:
Q  5 ctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcatttt 104  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||  || ||||||| || || |||||||| ||| |||||| ||| || |||||||    
T  6573549 ctttggatggctgaaggtttgctgaaatgttgcggaagagacaaaagtgaacaagagttgggtaatgaattcttggatgatctagagtccatttcatttt 6573648  T
Q  105 tccaacaatcag 116  Q
    ||||||||||||    
T  6573649 tccaacaatcag 6573660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 7730 - 7841
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    ||||||||||| |||||||||| |||| |||||||||  |||||||||  |||||||||| || || ||| | |||| | |||| | |||||| ||||||    
T  7730 gctttggatgggagaaggtttgctgaagtgttgcggatcagacaaaagtgaagaagagtttggcaatgaaattttcggtgatcttgagtcaatttcattt 7829  T
Q  104 ttccaacaatca 115  Q
    ||||||||||||    
T  7830 ttccaacaatca 7841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 7864 - 7909
Alignment:
Q  153 tcatgcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||||||||||||| | |||||||||||||||||    
T  7864 tcatgcatgatcttgtcaatgatttaacaaaatcagtgtcaggaga 7909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 35140597 - 35140771
Alignment:
Q  4 gctttggatggcagaaggtttgttgaattgttgcggaagagacaaaagcaaagaagagttagggaaagaattcttcgattatctagtgtcaatatcattt 103  Q
    |||||||||| ||||||||||| | ||  |||| | || || |||||   |||||||||| || ||  |||||||| || ||||||||||||| || |||    
T  35140597 gctttggatgacagaaggtttgctaaagggttgggaaatagccaaaaatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgttt 35140696  T
Q  104 ttccaacaatcagtattgatgccattatggaccagtaagtgctactttatcatgcatgatcttgtcaatgattta 178  Q
    |||||| |||||| | |  ||||||| ||| |  |||||||||| || ||| ||||||||||| |||||||||||    
T  35140697 ttccaaaaatcagcaattctgccattctgggctggtaagtgctatttcatcgtgcatgatcttatcaatgattta 35140771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 25242529 - 25242570
Alignment:
Q  157 gcatgatcttgtcaatgatttagcgaaatcagtgtcaggaga 198  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  25242529 gcatgatcttgtcaatgatttagcaaaatcagtgtcgggaga 25242570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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