View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13926_low_55 (Length: 245)
Name: NF13926_low_55
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13926_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 24232955 - 24233044
Alignment:
| Q |
34 |
gtaatgatatttgtataattatttagtgatatgaataattttaaaagagtaatgatatttgtataattgtttggtgacaacttttgttat |
123 |
Q |
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| T |
24232955 |
gtaatgatatttgtataattatttggtactatgaataattttaaaagagtaatgatatttgtataattgtttggtgacaatttttgttat |
24233044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 24232912 - 24232953
Alignment:
| Q |
16 |
atgaataattttagaattgtaatgatatttgtataattattt |
57 |
Q |
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| T |
24232912 |
atgaataattttagaattgtaatgatatttgtataattattt |
24232953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 22402819 - 22402779
Alignment:
| Q |
80 |
gagtaatgatatttgtataattgtttggtgacaacttttgt |
120 |
Q |
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| T |
22402819 |
gagtaatgatatttgtataattatttgatgacaacttttgt |
22402779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 24232908 - 24232956
Alignment:
| Q |
60 |
tgatatgaataattttaaaagagtaatgatatttgtataattgtttggt |
108 |
Q |
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| T |
24232908 |
tgatatgaataattttagaattgtaatgatatttgtataattatttggt |
24232956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 9240303 - 9240262
Alignment:
| Q |
79 |
agagtaatgatatttgtataattgtttggtgacaacttttgt |
120 |
Q |
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| T |
9240303 |
agagtaatcatatttgtacaattatttggtgacaacttttgt |
9240262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 7420819 - 7420779
Alignment:
| Q |
78 |
aagagtaatgatatttgtataattgtttggtgacaactttt |
118 |
Q |
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| T |
7420819 |
aagagtaatgatatttgtacaattatttcgtgacaactttt |
7420779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 9882555 - 9882591
Alignment:
| Q |
83 |
taatgatatttgtataattgtttggtgacaacttttg |
119 |
Q |
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| T |
9882555 |
taatgatatttgtacaattatttggtgacaacttttg |
9882591 |
T |
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