View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_60 (Length: 226)

Name: NF13926_low_60
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_60
NF13926_low_60
[»] chr3 (2 HSPs)
chr3 (6-226)||(12899918-12900138)
chr3 (6-226)||(30683844-30684064)
[»] chr2 (2 HSPs)
chr2 (6-226)||(41895835-41896055)
chr2 (8-226)||(22634433-22634651)
[»] chr4 (3 HSPs)
chr4 (6-226)||(14932105-14932326)
chr4 (6-226)||(14941310-14941531)
chr4 (19-155)||(30627102-30627237)
[»] chr8 (2 HSPs)
chr8 (6-226)||(45489982-45490203)
chr8 (6-226)||(45498940-45499161)
[»] chr5 (5 HSPs)
chr5 (6-226)||(15321546-15321766)
chr5 (6-226)||(15330549-15330769)
chr5 (6-226)||(18707988-18708208)
chr5 (6-226)||(18717002-18717222)
chr5 (6-218)||(29958217-29958429)
[»] scaffold0113 (1 HSPs)
scaffold0113 (16-218)||(4412-4615)
[»] scaffold0103 (1 HSPs)
scaffold0103 (121-217)||(26726-26822)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 12899918 - 12900138
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  12899918 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttcctttcaaagttgagatcgatctctaaatctgctgaagctttcc 12900017  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12900018 tttgtactttgttgcttgctacgtgagacatgagctttgtacaactcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 12900117  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  12900118 tttcttgtactaggtagcttt 12900138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 30684064 - 30683844
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||    
T  30684064 aaattcttcctttcttgcagcgcaagtttcaagggagcctttgagatgaaactgttcctttcgaagttgagatcgatctctaaatctgctgaggctttcc 30683965  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  30683964 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaccataagacttgagcccaaagaaaaggct 30683865  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  30683864 tttcttgtactaggtagcttt 30683844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 41896055 - 41895835
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  41896055 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatctgccgaagctttcc 41895956  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41895955 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcatttgttgctgtaacataagtcttgagcccaaagaaaaggct 41895856  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  41895855 tttcttgtactaggtagcttt 41895835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 22634651 - 22634433
Alignment:
Q  8 attcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22634651 attcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaatttgttccttttaaagttgagatcgatctctaaatctgctgaagctttcctt 22634552  T
Q  108 tgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggcttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22634551 tgtactttgttgcttgctacgtgagacatgagctttgtacaactcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggcttt 22634452  T
Q  208 tcttgtactagatagcttt 226  Q
    ||||||||||| |||||||    
T  22634451 tcttgtactaggtagcttt 22634433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 14932326 - 14932105
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14932326 aaattcttcctttcttgcagcgcaagaatcatgggagccgttgagatgaaactgttccttttaaagttgagatcgatctctaaatctgctgaagctttcc 14932227  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaaca-taagtcttgagcccaaagaaaaggc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  14932226 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcatttgttgctgtaacattaagtcttgagcccaaagaaaaggc 14932127  T
Q  205 ttttcttgtactagatagcttt 226  Q
    |||||||||||||| |||||||    
T  14932126 ttttcttgtactaggtagcttt 14932105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 14941531 - 14941310
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14941531 aaattcttcctttcttgcagcgcaagaatcatgggagccgttgagatgaaactgttccttttaaagttgagatcgatctctaaatctgctgaagctttcc 14941432  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaaca-taagtcttgagcccaaagaaaaggc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  14941431 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcatttgttgctgtaacattaagtcttgagcccaaagaaaaggc 14941332  T
Q  205 ttttcttgtactagatagcttt 226  Q
    |||||||||||||| |||||||    
T  14941331 ttttcttgtactaggtagcttt 14941310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 30627102 - 30627237
Alignment:
Q  19 cttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcctttgtactttgtt 118  Q
    |||||| ||||||| ||| | ||| ||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30627102 cttgcaacgcaagattcaagtgagtctttgagatgaaaatgttc-tttgaaagttgagatcgatctctaaagttgctgaagctttcctttgtactttgtt 30627200  T
Q  119 gcttgctacgtgagacatgagctttgtacagctcatt 155  Q
     |||||||  |||| ||||| ||||||||| ||||||    
T  30627201 tcttgctatatgaggcatgaactttgtacaactcatt 30627237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 45489982 - 45490203
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  45489982 aaattcttcctttcttgcagcgcaagaatcatgggagccgttgagatgaaactgttccttttaaagttgagatcgatctctaaatctgctgaagctttca 45490081  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaaca-taagtcttgagcccaaagaaaaggc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  45490082 tttgtactttgttgcttgctacgtgagacatgagctttgtacaactcatttccttttcatttgttgctgtaacattaagtcttgagcccaaagaaaaggc 45490181  T
Q  205 ttttcttgtactagatagcttt 226  Q
    |||||||||||||| |||||||    
T  45490182 ttttcttgtactaggtagcttt 45490203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 45498940 - 45499161
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||     
T  45498940 aaattcttcctttcttgcagcgcaagaatcatgggagccgttgagatgaaaccgttccttttaaagttgagatcgatctctaaatctgctgaagctttca 45499039  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaaca-taagtcttgagcccaaagaaaaggc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  45499040 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcatttgttgctgtaacattaagtcttgagcccaaagaaaaggc 45499139  T
Q  205 ttttcttgtactagatagcttt 226  Q
    |||||||||||||| |||||||    
T  45499140 ttttcttgtactaggtagcttt 45499161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 15321546 - 15321766
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||    
T  15321546 aaattcttcctttcttgcagcgcaagtttcaagggagcctttgagatgaaactgttcctttcgaagttgagatcgatctctaaatctgctgaggctttcc 15321645  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  15321646 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaccataagacttgagcccaaagaaaaggct 15321745  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  15321746 tttcttgtactaggtagcttt 15321766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 15330549 - 15330769
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||    
T  15330549 aaattcttcctttcttgcagcgcaagtttcaagggagcctttgagatgaaactgttcctttcgaagttgagatcgatctctaaatctgctgaggctttcc 15330648  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  15330649 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaccataagacttgagcccaaagaaaaggct 15330748  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  15330749 tttcttgtactaggtagcttt 15330769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 18708208 - 18707988
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||    
T  18708208 aaattcttcctttcttgcagcgcaagtttcaagggagcctttgagatgaaactgttcctttcgaagttgagatcgatctctaaatctgctgaggctttcc 18708109  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  18708108 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaccataagacttgagcccaaagaaaaggct 18708009  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  18708008 tttcttgtactaggtagcttt 18707988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 18717222 - 18717002
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||    
T  18717222 aaattcttcctttcttgcagcgcaagtttcaagggagcctttgagatgaaactgttcctttcgaagttgagatcgatctctaaatctgctgaggctttcc 18717123  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  18717122 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaccataagacttgagcccaaagaaaaggct 18717023  T
Q  206 tttcttgtactagatagcttt 226  Q
    ||||||||||||| |||||||    
T  18717022 tttcttgtactaggtagcttt 18717002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 29958429 - 29958217
Alignment:
Q  6 aaattcttcctttcttgcagcgcaagaatcatgggagcctttgagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcc 105  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  29958429 aaattcttcctttcttgcagcacaagattcaagggagcctttgagatggaactgttcctttcaaagttgagatcgatctctaaatctgctgaagctttcc 29958330  T
Q  106 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  29958329 tttgtactttgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaccataagacttgagcccaaagaaaaggct 29958230  T
Q  206 tttcttgtactag 218  Q
    |||||||||||||    
T  29958229 tttcttgtactag 29958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 4615 - 4412
Alignment:
Q  16 tttcttgcagcgcaagaatcatgggagccttt-gagatgaaactgttccttttaaagttgagatcgatctctaaatttgctgaagctttcctttgtactt 114  Q
    |||||||||||| |||| |||||||||||||| |||| |||| ||||| ||| ||||||||||||||||||||||| |  |||| |||| ||||||||||    
T  4615 tttcttgcagcgaaagactcatgggagccttttgagacgaaattgttcttttcaaagttgagatcgatctctaaatctattgaaacttttctttgtactt 4516  T
Q  115 tgttgcttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaac-ataagtcttgagcccaaagaaaaggcttttcttgt 213  Q
    ||||||||  ||||||||||| |||||||||||| ||||||| |||| || || |||||||| |  | | ||||||||||||||||||||||||| ||||    
T  4515 tgttgcttagtacgtgagacaagagctttgtacaactcattttctttcca-ttcttgctgtagctttcaatcttgagcccaaagaaaaggcttttgttgt 4417  T
Q  214 actag 218  Q
    |||||    
T  4416 actag 4412  T

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Target: scaffold0103 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 26726 - 26822
Alignment:
Q  121 ttgctacgtgagacatgagctttgtacagctcatttccttttcacttgttgctgtaacataagtcttgagcccaaagaaaaggcttttcttgtacta 217  Q
    ||||| |||||||  ||||||||||||||||||||   || ||| || |||||| | |||||||||| |||||||||||||| ||||| ||||||||    
T  26726 ttgcttcgtgagagctgagctttgtacagctcattgttttatcatttcttgctggagcataagtcttaagcccaaagaaaagccttttgttgtacta 26822  T

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