View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13926_low_7 (Length: 550)

Name: NF13926_low_7
Description: NF13926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13926_low_7
NF13926_low_7
[»] chr6 (11 HSPs)
chr6 (17-416)||(11170820-11171219)
chr6 (17-387)||(11209642-11210012)
chr6 (17-375)||(11276204-11276562)
chr6 (17-370)||(11196973-11197326)
chr6 (17-390)||(11156520-11156895)
chr6 (17-370)||(11241005-11241364)
chr6 (17-269)||(11200138-11200394)
chr6 (17-366)||(11133244-11133593)
chr6 (37-269)||(11161415-11161651)
chr6 (462-548)||(11171285-11171371)
chr6 (506-548)||(8382104-8382146)
[»] scaffold1207 (1 HSPs)
scaffold1207 (17-390)||(1135-1490)
[»] scaffold0734 (2 HSPs)
scaffold0734 (333-387)||(6714-6770)
scaffold0734 (506-548)||(1916-1958)
[»] chr7 (10 HSPs)
chr7 (506-549)||(41415672-41415715)
chr7 (506-548)||(2407358-2407400)
chr7 (506-548)||(7875716-7875758)
chr7 (22-84)||(8602229-8602291)
chr7 (246-360)||(6789991-6790105)
chr7 (22-84)||(8382727-8382789)
chr7 (304-366)||(8559870-8559932)
chr7 (286-360)||(8585281-8585355)
chr7 (506-548)||(40352671-40352713)
chr7 (252-361)||(3147757-3147866)
[»] chr5 (1 HSPs)
chr5 (506-548)||(5003527-5003569)
[»] chr8 (1 HSPs)
chr8 (506-548)||(18896459-18896501)
[»] chr2 (2 HSPs)
chr2 (54-84)||(7542513-7542543)
chr2 (322-366)||(7542781-7542825)
[»] chr1 (2 HSPs)
chr1 (507-548)||(33096059-33096100)
chr1 (244-302)||(15595516-15595571)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 11170820 - 11171219
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11170820 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagta 11170919  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||| ||| |||    
T  11170920 tgcaggcacagttataacaacatcctccactattgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagca 11171019  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171020 gcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 11171119  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttggatcgctttatgaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  11171120 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaacaattggatcgctttatgaat 11171219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 11209642 - 11210012
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11209642 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagta 11209741  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||| |||    
T  11209742 tgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagca 11209841  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||    
T  11209842 gcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttcta 11209941  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 387  Q
    ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209942 ctatggggtcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 11276204 - 11276562
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||||||||||||||| | |||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  11276204 caattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagta 11276303  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||    
T  11276304 tgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagca 11276403  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11276404 gtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 11276503  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11276504 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 11196973 - 11197326
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||    
T  11196973 caattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagta 11197072  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
     ||||||||||||||||| ||||||| |||||||||||||||| | ||||| ||||||||   |||||| ||||||||||| ||||| |||| ||| |||    
T  11197073 agcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagca 11197172  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||| |||||| |||||||||||    
T  11197173 gcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgta 11197272  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaa 370  Q
    | || |  || | ||| |||| ||||||||||||||||||||||||||||||||    
T  11197273 cgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 11156520 - 11156895
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||  ||||||||||| | || ||||||||||||||||||||||||||    
T  11156520 caattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagta 11156619  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
     ||||||||||||||||| ||||||| |||||||||||||||| |  |||| ||||||||   |||||| ||||||||||| ||||| |||| ||| |||    
T  11156620 agcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagca 11156719  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||  |||||||||||||| |||||| |||||| |||||||||||    
T  11156720 gcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgta 11156819  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaa--aagagagttgtgtacactatg 390  Q
    | || |  || | ||| |||| |||||||||||||||||||||||||||||||  || ||||||| ||||||||||    
T  11156820 cgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaagagttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 11241364 - 11241005
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    |||||||| |||||||||||||| ||| ||||| |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11241364 caattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtgagtcattaaagta 11241265  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
     ||||||||||||||||| ||||||| |||||||||||||||| | ||||| |||||||    |||||| ||||||||||| ||||| |||| ||| |||    
T  11241264 agcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagca 11241165  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    || ||||||||||||||||||||||||||||||| | ||||  |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  11241164 gcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcactttgta 11241065  T
Q  317 ctatgggatcac------taaatttccgaccaattagcctctttgcatctacaaaacaaa 370  Q
      ||||| ||||      |||| |||| ||||||||||||||||||||||||||||||||    
T  11241064 tgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 11200138 - 11200394
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgt----tgtgagtcattaa 112  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    ||||| |||||||    
T  11200138 caattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaa 11200237  T
Q  113 agtatgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttc 212  Q
    |||||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||| || ||||| | |||||| | ||||||||||||||| |||| |||    
T  11200238 agtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttc 11200337  T
Q  213 tgcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcatt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11200338 tgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 11133244 - 11133593
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||| |||||||| |||| |||||||| ||| ||||| || |||||  |||| ||||||| |||||  |||||||| ||||||||||||||    
T  11133244 caattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagta 11133343  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
     ||||| ||||||||||||||||||| |||||||||||||||| |  ||||||| |||||||| ||||| | ||||||||| ||||| ||||  || |||    
T  11133344 agcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagca 11133443  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    |||||||| ||||||||  |||| || || ||||||||  | ||||||||||| | | ||||||||||||| ||||||||||| |||| |||||| || |    
T  11133444 gcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactctgaa 11133543  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaa 366  Q
    |||| || ||||||||||  | |||||| |||||||| ||||||||||||    
T  11133544 ctatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 11161415 - 11161651
Alignment:
Q  37 tcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttata 132  Q
    ||||||| || ||||| |||||| |||||| |||| |||||||||||||||||||||||||||    |||||  |||||||||||| ||||||| |||||    
T  11161415 tcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattata 11161514  T
Q  133 acgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgcagcaaaatgcttttcct 232  Q
    || ||||||| |||||||||||||||| | ||||| || ||||| | |||||| | ||||||||||||||| |||| |||||||||||||||||||||||    
T  11161515 acaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcct 11161614  T
Q  233 cgtcattatagttaacaacaatcataggtttgtcatt 269  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11161615 cgtcattatagttaacaacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 462 - 548
Target Start/End: Original strand, 11171285 - 11171371
Alignment:
Q  462 gcttgtatagaaaatactcttatatatttaaccctataagaaatacaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    |||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11171285 gcttgtatagaaaatactattatatatttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaat 11171371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 8382104 - 8382146
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaat 8382146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 1135 - 1490
Alignment:
Q  17 caattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatctcgagtagactggcgttgtgagtcattaaagta 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  1135 caattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagta 1234  T
Q  117 tgcaggcacagttataacgacatcctccactgttgatccaaggaaggcttctgctatctcacgcattttcgccaataccatggatgaaatttgttctgca 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||| |||    
T  1235 tgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagca 1334  T
Q  217 gcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |                   | ||||||||||||||||||||||||||| ||    
T  1335 gcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatggccacaacttcacatcactttcta 1416  T
Q  317 ctatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg 390  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1417 ctatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg 1490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  333 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 387  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 1916 - 1958
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  1916 acaatcttgagattttggtcccctataaaaaacaataacaaat 1958  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 506 - 549
Target Start/End: Original strand, 41415672 - 41415715
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaatt 549  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaatt 41415715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 2407358 - 2407400
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  2407358 acaatcttgcgattttggtcccctataaaaaacaataacaaat 2407400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 7875716 - 7875758
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaat 7875758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 8602229 - 8602291
Alignment:
Q  22 gcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatct 84  Q
    ||||||||||| |||||||||| ||| ||||  |||||||| |||||||||||||| ||||||    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 6789991 - 6790105
Alignment:
Q  246 aacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaatt 345  Q
    |||||||||||| || |||||||| | | || |||| || ||||||||||| ||| ||| |||| |||| || |  | ||||||||| |||| |||||||    
T  6789991 aacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaatt 6790090  T
Q  346 agcctctttgcatct 360  Q
    | |||||| ||||||    
T  6790091 aacctcttagcatct 6790105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 8382789 - 8382727
Alignment:
Q  22 gcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatggcacccgcatct 84  Q
    ||||| ||||| |||||||||| ||| ||||  ||||||||||||||||| ||||| ||||||    
T  8382789 gcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 8559870 - 8559932
Alignment:
Q  304 acatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaa 366  Q
    ||||||||||| ||||||| ||||||  ||||||  ||||||| ||||||||||||| |||||    
T  8559870 acatcactttggactatggaatcactgtatttccttccaattaacctctttgcatctgcaaaa 8559932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 8585355 - 8585281
Alignment:
Q  286 ttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatct 360  Q
    ||||||||||||||| | | |||| |||| || | |||||||||||| |||| |||||||| |||||| ||||||    
T  8585355 ttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatct 8585281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 40352671 - 40352713
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||| |||||||||| | ||||||||||||||||||||    
T  40352671 acaatcttgcgattttggtcgcctataaaaaacaataacaaat 40352713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 361
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
Q  252 aatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctc 351  Q
    |||||| |||||||||||||   | | ||| || ||||||||||||||| ||| |||| |||| || |  | ||||| ||| |||| |||||||| ||||    
T  3147757 aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc 3147856  T
Q  352 tttgcatcta 361  Q
    ||||||||||    
T  3147857 tttgcatcta 3147866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 5003527 - 5003569
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaat 5003569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 18896459 - 18896501
Alignment:
Q  506 acaatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaat 18896501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 7542513 - 7542543
Alignment:
Q  54 aacattgaggccagcaatggcacccgcatct 84  Q
    |||||||||||||||||||||||||||||||    
T  7542513 aacattgaggccagcaatggcacccgcatct 7542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 7542781 - 7542825
Alignment:
Q  322 ggatcactaaatttccgaccaattagcctctttgcatctacaaaa 366  Q
    ||||||||||| |||| |||||||| |||||| ||||||||||||    
T  7542781 ggatcactaaacttcctaccaattaacctcttagcatctacaaaa 7542825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 33096059 - 33096100
Alignment:
Q  507 caatcttgggattttggtcccttataaaaaacaataacaaat 548  Q
    ||||||||  ||||||||||||||||||||| ||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaat 33096100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  244 ttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt 302  Q
    ||||||| |||||| |||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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