View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13927_low_2 (Length: 502)
Name: NF13927_low_2
Description: NF13927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13927_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 7 - 502
Target Start/End: Complemental strand, 55668172 - 55667679
Alignment:
| Q |
7 |
attcatttggcagataagtgtcaataaaattgaatttgcctattttaatatacaactgtgctctcagctacttctcattatgctcattataattactaat |
106 |
Q |
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| T |
55668172 |
attcatttggcagataattgtcaataaaattgaatttgcctcttttaatatagaactgtgctctcagctacttctcattatgctcattataattactaat |
55668073 |
T |
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| Q |
107 |
aagttgcattttgtgtaatgacacttaagcatgatgtgttgctctcattagagcatgtaattttcagagggaaactatatcctacggccgcggtcattta |
206 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55668072 |
aagttgcattttttgtaatgacacttaagcatgatgtgttgctctcattagagcatgaaattttcagagggaaactatatcctacggccgcggtcattta |
55667973 |
T |
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| Q |
207 |
aattgtttaatcatatcatattggtcatttaaagtttctttgtttgacctaggtcttttaaatctcattacttccacattgttatcttttttgtcacaca |
306 |
Q |
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| T |
55667972 |
aattgtttaatcatatcatattggtcatctaaagtttctttgtttgacctaggtcttttaaatctcattacttccacattgttatcttttttgtcacaca |
55667873 |
T |
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| Q |
307 |
ttctgttataaaaataaac--atctgttacgtggctgacattgatcgcttatcccatgcgtgctcctttctcatcttctatgcgttactcttgtccattt |
404 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55667872 |
ttctgttataaaaatacacatatctgttacgtggctgacattgatcgcttatcccatgcgtgctcctttctcatcttctatgcgcaactcttgtccattt |
55667773 |
T |
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| Q |
405 |
taaaactaggtgaaaccatttgtgtcaacgaatgcacaagtgtacgtaagaagatgaataaagagaattttctataatattttcgtacattgggagac |
502 |
Q |
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||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55667772 |
taaaactaggtgaaaccatttgtgtcaactattgcacaagt----gtaagaagatgaataaagagaattttctataatattttcgtacattgggagac |
55667679 |
T |
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