View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13927_low_3 (Length: 412)
Name: NF13927_low_3
Description: NF13927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13927_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 17514706 - 17514458
Alignment:
| Q |
14 |
aggtagcaacaacaatgatgggaagcaataaaatcaggaatatcaattacaagacctaaactttaattttttgtcttaaatatttagttgattttgttgc |
113 |
Q |
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| T |
17514706 |
aggtagcaccaacaatgatgggaaggaataaaatcaggaatatcaattacaagacctaaacttcaattttatggctcaaagatttagttgattttgtttc |
17514607 |
T |
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| Q |
114 |
aatttttaactttgttcatctgttattttactttggattcagcaagtactcatatttttcatagatactttttctttttgggaggaagatttgatgttgg |
213 |
Q |
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| T |
17514606 |
aatttttatctttattcatctgttattttactttggattcaggaagtactcatatttttcatagatactttttctttttgggaggaatatttgatgttgg |
17514507 |
T |
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| Q |
214 |
tggttatatgatcccttagaggtattctgaaattttctgccaaaacaac |
262 |
Q |
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| T |
17514506 |
tggttatatgatccctcaaaggtattatgaaattttgtgccaaaacaac |
17514458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 17529849 - 17529612
Alignment:
| Q |
21 |
aacaacaatgatgggaagcaataaaatcaggaatatcaattacaagacctaaactttaattttttgtcttaaatatttagttgattttgttgcaattttt |
120 |
Q |
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| T |
17529849 |
aacaacaatgatgggaaggaataaaatcaggaataccaattacaagacctaaactacaattttttggctcaaagatttagttgattttgttgccattttt |
17529750 |
T |
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| Q |
121 |
aactttgttcatctgttattttactttggattcagcaagtactcatatttttcatagatactttttctttttgggaggaagatttgatgttggtggttat |
220 |
Q |
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| T |
17529749 |
ttgtttgttcatctgttattttactttggattcaggaagtactcatatttttcattgatacttttttttt---ggatggtgatttgatgttagtggttat |
17529653 |
T |
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| Q |
221 |
atgatcccttagaggtattctgaaattttctgccaaaacaac |
262 |
Q |
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| T |
17529652 |
atgatcccccagaggta-tatgaaattttgtgccaaaacaac |
17529612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 16856434 - 16856181
Alignment:
| Q |
14 |
aggtagcaacaacaatgatgggaagcaataaaatcaggaatat----caattacaagacctaaactttaattttttgtcttaaatatttagttgattttg |
109 |
Q |
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| T |
16856434 |
aggtagcagcaacaatgatgggaagaaataaaaccaggaatatatatcaatcacaagagctaaacttcaattttttggctcaaagatttagtt-attttg |
16856336 |
T |
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| Q |
110 |
ttgcaatttttaactttgttcatctgttattttactttggattcagcaagtactcatatttttcatagatact--ttttctttttgggaggaagatttga |
207 |
Q |
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| T |
16856335 |
ttgccattttttt-tttgttcaattgttattttactttggattcaggtattactcatatttttcatagatactagttttttttttgggatggagatttta |
16856237 |
T |
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| Q |
208 |
tgttggtggttatatgat-cccttagaggtattctgaaattttctgccaaaacaac |
262 |
Q |
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| T |
16856236 |
tgttagtggttatatgatccccttaaaggtattatgaaattttctgccaaaacaac |
16856181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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