View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13927_low_4 (Length: 280)
Name: NF13927_low_4
Description: NF13927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13927_low_4 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 33260511 - 33260711
Alignment:
| Q |
6 |
agtactcattagttaatttgttcttgtgttactctaaactgattgggtaaaaagaacatgatgtcaaactccaatag------------gtatatttgaa |
93 |
Q |
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| T |
33260511 |
agtactcattagttaatttgttcttgtgttactctaaactgattgggtaaaaagaacatgatgtcaaactccaatagtatacctgaatggtatatttgaa |
33260610 |
T |
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| Q |
94 |
agaaataaatgtaaataattttgtaaatattatttggtctttaaagtcttcactattttaaattggaacaacaatcttttcatcctaaattgtttgtgat |
193 |
Q |
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| T |
33260611 |
agaaataaatgtaaataattttgtaaatattatttggtctttaaagtcttcactattttaaattggaacaacaatcttttcagcctaaattttttgtgat |
33260710 |
T |
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| Q |
194 |
a |
194 |
Q |
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| T |
33260711 |
a |
33260711 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 43196628 - 43196679
Alignment:
| Q |
223 |
taatgcgagtatgagaaggaaagttgttacaaaacttatcacaaaataaatg |
274 |
Q |
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| T |
43196628 |
taatgtgagtatgagaaagaaagttgtaacaaaaattgtcacaaaataaatg |
43196679 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 39697224 - 39697271
Alignment:
| Q |
222 |
gtaatgcgagtatgagaaggaaagttgttacaaaacttatcacaaaat |
269 |
Q |
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| T |
39697224 |
gtaatgtgagtatgagagagaaagttgttacaaaaattatcacaaaat |
39697271 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 10700195 - 10700229
Alignment:
| Q |
229 |
gagtatgagaaggaaagttgttacaaaacttatca |
263 |
Q |
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| T |
10700195 |
gagtatgagaaggaaagttgttacaaaagttatca |
10700229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 35213563 - 35213621
Alignment:
| Q |
222 |
gtaatgcgagtatgagaaggaaagttgttacaaaacttatcacaaaataaatgctcaaa |
280 |
Q |
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| T |
35213563 |
gtaatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatagatgttcaaa |
35213621 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 13086091 - 13086033
Alignment:
| Q |
222 |
gtaatgcgagtatgagaaggaaagttgttacaaaacttatcacaaaataaatgctcaaa |
280 |
Q |
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| T |
13086091 |
gtaatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatgaatgatcaaa |
13086033 |
T |
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