View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13928_high_3 (Length: 303)
Name: NF13928_high_3
Description: NF13928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13928_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 6565254 - 6565526
Alignment:
| Q |
10 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565254 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
6565353 |
T |
|
| Q |
110 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565354 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
6565453 |
T |
|
| Q |
210 |
agagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6565454 |
agagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaa |
6565526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 34261499 - 34261390
Alignment:
| Q |
150 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
249 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||| |
|
|
| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
34261400 |
T |
|
| Q |
250 |
ctccttatct |
259 |
Q |
| |
|
|||||||||| |
|
|
| T |
34261399 |
ctccttatct |
34261390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University