View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13928_low_1 (Length: 600)
Name: NF13928_low_1
Description: NF13928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13928_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 44 - 585
Target Start/End: Complemental strand, 35698632 - 35698097
Alignment:
| Q |
44 |
tacaacaattatgttttatattctctctaggcaattcatgtacattccannnnnnnataagcattctatatactttatttttatatagacgaaatgacaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35698632 |
tacaacaattatgttttatattctctctaggcaattcatgtacattccatttttttataagcattctatatactttatttttagatagacgaaatgacaa |
35698533 |
T |
|
| Q |
144 |
taaccattagaaattgacacaataaatggaggagtcggagttcaaacaccgatcatagctactaggtttttatgaattatgatggacataactcatcttt |
243 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
35698532 |
taaccattagaaatttacacaataaatggaggagtcggagttcaaacaccgatcatagctacaaggtttttatga-------tggacataactcatcttt |
35698440 |
T |
|
| Q |
244 |
acaaagctaacttaaccgacttttaaggtgagaaacgtctctatttataaactcttataaagacgcctatcttttcaatgtgggacttgagttttctcaa |
343 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35698439 |
acaaagctgacttaatcgacttttaaggtgagaaacgtctctatttataaactcttataaagacgcctatcttttcaatgtgggacttgagttttatcaa |
35698340 |
T |
|
| Q |
344 |
tacacccctca-gcatctatctttataaactcttataaagactcctatcttttcaatatgagatttgagttttctcaatacacctactcattcccataac |
442 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
35698339 |
tacacccctcacgcatctatctttataaactcttataaagactcctatcttttaaatatgagatttgagttttctcaatacaccccctcattctcataac |
35698240 |
T |
|
| Q |
443 |
tattgagcttgatgcgtgaatatgtaggtttcctgatcgataagatttgatatcatataggtttttatgttggacctataacacgtccttacaaagccat |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35698239 |
tattgagcttgatgcgtgaatatgtaggttttctgatcgataagatttgacaccatataggtttttatgttggacctataacacatccttacaaagccat |
35698140 |
T |
|
| Q |
543 |
cttaaccggcttgtaaggtgaggagtgtcattctttataaagt |
585 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35698139 |
cttaaccggcttgtaaggtgagaagtgtcattctttataaagt |
35698097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 26847264 - 26847346
Alignment:
| Q |
256 |
taaccgacttttaaggtgagaaacgtctctatttataaactcttataaagacgcctatcttttcaatgtgggacttgagtttt |
338 |
Q |
| |
|
|||||| ||| ||||||||||| |||||| ||||||||||||||| |||| ||||||| | |||||||||||||| ||||| |
|
|
| T |
26847264 |
taaccggcttgtaaggtgagaagtgtctctctttataaactcttatcaagagtcctatctatccaatgtgggacttgggtttt |
26847346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 28895608 - 28895527
Alignment:
| Q |
257 |
aaccgacttttaaggtgagaaacgtctctatttataaactcttataaagacgcctatcttttcaatgtgggacttgagtttt |
338 |
Q |
| |
|
||||| ||| ||||||||| | |||||| ||||||||||||||| ||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
28895608 |
aaccggcttgtaaggtgaggagtgtctctttttataaactcttatctagagccctatcttttcaatgtgggatttgggtttt |
28895527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 41892395 - 41892438
Alignment:
| Q |
311 |
tatcttttcaatgtgggacttgagttttctcaatacacccctca |
354 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
41892395 |
tatcttttcaatgtgggacttgagttttttccatacacctctca |
41892438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 13948234 - 13948154
Alignment:
| Q |
121 |
tttttatatagacgaaatgacaataaccattagaaattgacacaataaatggaggagtcggagttcaaacaccgatcatagc |
202 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||| | |||||| || |||||| | ||| |||| ||| ||||||||||| |
|
|
| T |
13948234 |
tttttagatagacgaaatgacaa-aaccattataaactcacacaacaagtggaggcgccggggttcgaaccccgatcatagc |
13948154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 546 - 584
Target Start/End: Complemental strand, 44441161 - 44441123
Alignment:
| Q |
546 |
aaccggcttgtaaggtgaggagtgtcattctttataaag |
584 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
44441161 |
aaccgacttgtaaggtgaggagtgtcactctttataaag |
44441123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 395421 - 395355
Alignment:
| Q |
284 |
ctatttataaactcttataaagacgcctatcttttcaatgtgggacttgagt-tttctcaatacacc |
349 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| | |||||||||||||| || |||| ||||||||| |
|
|
| T |
395421 |
ctatttataaactcttatcaagaatcctatctatccaatgtgggacttgggtctttcccaatacacc |
395355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 1893841 - 1893788
Alignment:
| Q |
362 |
tctttataaactcttataaagactcctatcttttcaatatgagatttgagtttt |
415 |
Q |
| |
|
||||||||||||||||| |||| || ||||| | |||||||||| ||||||||| |
|
|
| T |
1893841 |
tctttataaactcttatcaagagtcgtatctatccaatatgagacttgagtttt |
1893788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University