View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13928_low_3 (Length: 472)
Name: NF13928_low_3
Description: NF13928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13928_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 34652924 - 34653052
Alignment:
| Q |
16 |
catcttagtaaaatatactttgattcgatttgtctataatcctaacacatacgaatcaatttatatgaaacaagaatcttggatacccccacaaaaggtg |
115 |
Q |
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| T |
34652924 |
catcttagtaaaatatactttgattcgatttgtctataatcctaacacatacgaatcaatttatatgaaacaagaatcttggatacccccac-aatggtg |
34653022 |
T |
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| Q |
116 |
tgtaaatttataactctgcataaaaccaaa |
145 |
Q |
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| T |
34653023 |
tgtaaatttataactctgcataaaaccaaa |
34653052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 34653053 - 34653166
Alignment:
| Q |
195 |
atcatagtgctacaaatttagattagccgatcgctaattaagataaaatcagcatatataaaaatat-ataaatctatttagaccacataataaaagttt |
293 |
Q |
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| T |
34653053 |
atcatagtgctacaaatttagattagccgatcgctaattaagataaaagcagcatatataaatatataatctatatatttagaccacataataaaagttt |
34653152 |
T |
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| Q |
294 |
c-aagtcgacataa |
306 |
Q |
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| T |
34653153 |
caaagtcgacataa |
34653166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 34653198 - 34653236
Alignment:
| Q |
327 |
agttgcatccacaaggaaactaagcaaaacaaaataact |
365 |
Q |
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| T |
34653198 |
agttgcatccacaaggaaactaagcaaaacaaaataact |
34653236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 34653309 - 34653342
Alignment:
| Q |
439 |
gatccatgaaaacttcattagtcataaaccatac |
472 |
Q |
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| T |
34653309 |
gatccatgaaaacttcattagtcataaaccatac |
34653342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 17173418 - 17173468
Alignment:
| Q |
315 |
taaacaagccttagttgcatccacaaggaaactaagcaaaacaaaataact |
365 |
Q |
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| T |
17173418 |
taaacaagcattagttccatccacaagaaaacttagcaaaacaaaataact |
17173468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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