View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13929_high_5 (Length: 390)
Name: NF13929_high_5
Description: NF13929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13929_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 29 - 377
Target Start/End: Complemental strand, 44714965 - 44714617
Alignment:
| Q |
29 |
gagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714965 |
gagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgt |
44714866 |
T |
|
| Q |
129 |
gcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaagg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714865 |
gcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaagg |
44714766 |
T |
|
| Q |
229 |
aaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714765 |
aaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgc |
44714666 |
T |
|
| Q |
329 |
ttttgcaatgggatttattctcgtccttgatcatatcagcggtgatgat |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44714665 |
ttttgcaatgggatttattctcgtccttgatcatatcagcggtgatgat |
44714617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 375
Target Start/End: Complemental strand, 44704262 - 44703916
Alignment:
| Q |
29 |
gagtctgcatcaacggtgggaaggctttaaaggtgaaaaaatggaaggtgataaaccaaccttcagcgtgaagagatcatcaatgatcggacgaccacgt |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || || ||||||||||| |||||||| |||||||| ||||| |||||||||||| ||||| |
|
|
| T |
44704262 |
gagtctacatcaacggtgggaaggctttaaaggtgaaagaagagacggtgataaacctaccttcagtgtgaagaggtcatctatgatcggacgagcacgt |
44704163 |
T |
|
| Q |
129 |
gcgggagtgacagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaagg |
228 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
44704162 |
actggagtaacagtggaggtgtacgataaccctggtgaggagtaccacattgaaggttgcttctctcaacgttgttgcacggtttttaacggaatgaagg |
44704063 |
T |
|
| Q |
229 |
aaattgtggctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatgctgc |
328 |
Q |
| |
|
||| || ||||||||| |||| |||||||||||||| |||||| || |||||| || |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
44704062 |
aaaacgtagctgagattcatcgcaaagtggaccccaccacaggtgttatgcttggaaaagaagtgttatctctttgtgttaagcctggttttgacgctgc |
44703963 |
T |
|
| Q |
329 |
ttttgcaatgggatttattctcgtccttgatcatatcagcggtgatg |
375 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
44703962 |
ctttgctatgggattcgttctcgtccttgatcaaatcaacggtgatg |
44703916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 324
Target Start/End: Original strand, 2278056 - 2278242
Alignment:
| Q |
138 |
acagtggaggtgtacgataacccaggtgaggagtaccatatcgaagggtgtttctctcaacgtggttgcaaagtttttaacgcgatgaaggaaattgtgg |
237 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| || |||||||||||| | ||| | | || || ||||||| || | ||| || | |||| |
|
|
| T |
2278056 |
acagtggaggtacacgataacccaggtgtggagtacctcattgaagggtgtttcccacaaagatgctgtaagatttttaatgccacaaagaaattagtgg |
2278155 |
T |
|
| Q |
238 |
ctgagatttatcgtaaagtggaccccactacaggtaatacgcttgggaaggaagtgttctctctttgtgttaagcctggttttgatg |
324 |
Q |
| |
|
|||||||| |||||||||||||||||| || || || ||||||||| ||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
2278156 |
ctgagattcgtcgtaaagtggaccccaccactagtgttatgcttgggaaagaagtgttcatgctttgtgttcaacctgattttgatg |
2278242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University