View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13929_low_1 (Length: 313)
Name: NF13929_low_1
Description: NF13929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13929_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 33415655 - 33415888
Alignment:
| Q |
19 |
atttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaatacacgaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33415655 |
atttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaat--acgaa |
33415752 |
T |
|
| Q |
119 |
tttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgac-ttatgatacataaacacaataatataatggtatttgtgtatttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33415753 |
tttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgactttatgatagataaacacaataatataatggtatttgtgtatttga |
33415852 |
T |
|
| Q |
218 |
gttttgctgttgtaagcaaaccacattttcttaaaa |
253 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| |
|
|
| T |
33415853 |
gttttgctgttgtaagaaagccacattttcttaaaa |
33415888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
57 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
|
| Q |
152 |
gttgtaagtgaaatttgtg |
170 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
37 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
92 |
Q |
| |
|
||||| ||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University