View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1392_high_5 (Length: 254)

Name: NF1392_high_5
Description: NF1392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1392_high_5
NF1392_high_5
[»] chr3 (10 HSPs)
chr3 (120-240)||(8252825-8252945)
chr3 (1-68)||(8252706-8252773)
chr3 (161-240)||(8350020-8350099)
chr3 (161-240)||(8260588-8260667)
chr3 (180-240)||(8356332-8356392)
chr3 (202-240)||(8258522-8258560)
chr3 (202-240)||(8265595-8265633)
chr3 (183-240)||(8352768-8352825)
chr3 (193-233)||(8334053-8334093)
chr3 (193-233)||(8360518-8360558)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 8252825 - 8252945
Alignment:
Q  120 tgtcgattgcactttctgataagaagcagattcagattcatactacaagcgtgagagacaattgttaacagaaaaataagaaactacaattggagctccc 219  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  8252825 tgtcgattgcactttctgataagaagcagatgcagattcatgctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctccc 8252924  T
Q  220 tttgatttttccttcctcttt 240  Q
    |||||||||||||||||||||    
T  8252925 tttgatttttccttcctcttt 8252945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8252706 - 8252773
Alignment:
Q  1 tcaaattatgtcaaataacatgagcctacaatgttaattctttacgaatcatatattttttcatatag 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252706 tcaaattatgtcaaataacatgagcctacaatgttaattctttacgaatcatatattttttcatatag 8252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 8350020 - 8350099
Alignment:
Q  161 actacaagcgtgagagacaattgttaacagaaaaataagaaactacaattggagctccctttgatttttccttcctcttt 240  Q
    |||||||||||||| || ||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8350020 actacaagcgtgagggataatagttaacagggaaataagaaactataattggagctccctttgatttttccttcctcttt 8350099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 8260588 - 8260667
Alignment:
Q  161 actacaagcgtgagagacaattgttaacagaaaaataagaaactacaattggagctccctttgatttttccttcctcttt 240  Q
    ||||||| ||||||||| ||  ||||||||  ||||||||||||||||||||||||| |||||||||||| || ||||||    
T  8260588 actacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctctctttgatttttctttgctcttt 8260667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 8356332 - 8356392
Alignment:
Q  180 attgttaacagaaaaataagaaactacaattggagctccctttgatttttccttcctcttt 240  Q
    |||||| ||||  ||||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  8356332 attgttgacagggaaataaggaactacaattggagctcccattgatttttccttgctcttt 8356392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 8258522 - 8258560
Alignment:
Q  202 actacaattggagctccctttgatttttccttcctcttt 240  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  8258522 actacaattggagctccctttgatttttccttactcttt 8258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 8265595 - 8265633
Alignment:
Q  202 actacaattggagctccctttgatttttccttcctcttt 240  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  8265595 actacaattggagctccctttgatttttccttactcttt 8265633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 8352768 - 8352825
Alignment:
Q  183 gttaacagaaaaataagaaactacaattggagctccctttgatttttccttcctcttt 240  Q
    ||||||||  ||||||||||||||||||| |||||| || ||||||||||| ||||||    
T  8352768 gttaacagggaaataagaaactacaattgaagctccattagatttttcctttctcttt 8352825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 8334053 - 8334093
Alignment:
Q  193 aaataagaaactacaattggagctccctttgatttttcctt 233  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  8334053 aaataagaaactacaattggaactccttttgatttttcctt 8334093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 8360518 - 8360558
Alignment:
Q  193 aaataagaaactacaattggagctccctttgatttttcctt 233  Q
    ||||||| ||||||||||||||||||  |||||||||||||    
T  8360518 aaataagtaactacaattggagctcctattgatttttcctt 8360558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University