View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1392_low_14 (Length: 279)
Name: NF1392_low_14
Description: NF1392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1392_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 42531013 - 42531201
Alignment:
| Q |
52 |
tcatcattatgatcatacacagtgagaagttctgatcatttagattgtaatttgaatgaatcagctacaataaaagcagatacctcatttgcaatgaaaa |
151 |
Q |
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| T |
42531013 |
tcattattatgatcatacacagtgagaagttctgatcatttagattgtaatttgaatgaatcagctacaataaaagcagatacctcatttgcaatgaaaa |
42531112 |
T |
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| Q |
152 |
ctaaggtgaaatcaatttcagagacattcataaatgtcattattctttctctactctagttctgattcgtgtccaccgtagagtctctg |
240 |
Q |
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| T |
42531113 |
ctaaggtgaaatcattttcagagacattcataaatgtcattattctttctctactctagttctgattcgtgtccaccatagagtctctg |
42531201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 58 - 203
Target Start/End: Original strand, 42537682 - 42537830
Alignment:
| Q |
58 |
ttatgatcatacacagtgagaagttctgatcatttagattgtaatttgaatgaatcagctacaa---taaaagcagatacctcatttgcaatgaaaacta |
154 |
Q |
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|||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
42537682 |
ttatgatcatacactgtgagaagctctgatcctttagattgaaataggaatgaatcagctacaagtttaaaagcagatacctcattagcaatgaaaacta |
42537781 |
T |
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| Q |
155 |
aggtgaaatcaatttcagagacattcataaatgtcattattctttctct |
203 |
Q |
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||| | |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42537782 |
aggcgtaatcgttttcagagacattcataaatgtcattattctttctct |
42537830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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